View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_high_6 (Length: 677)
Name: NF19403_high_6
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 191 - 459
Target Start/End: Original strand, 784223 - 784492
Alignment:
| Q |
191 |
ccttccgaatttcataatccgaaataggtttgaaaagtgggaaaagaaattcacttaaccttttgtatcttattaagattaagatggtgttttggctcat |
290 |
Q |
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| T |
784223 |
ccttccgaatttcataatccgaaataggtttgcaaagtgggaaaagaaattcacttaaccttttgtatcgtattaagattaagatggtgttttggctcct |
784322 |
T |
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| Q |
291 |
ctttttagtttttatttatgagagatacactttttgtcgtaagtatgatattgactctcctccatttag-ttttttatttatgagagagatagacatgtg |
389 |
Q |
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| T |
784323 |
ctttttagtttttatttatgagagatacactttttgtcgtaagtatgatattgactctcctccatttagtttttttatttatgagagagatagacatgtg |
784422 |
T |
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| Q |
390 |
atatcttagtaattaagtggatcccacaaaaccatcacttatttatctctcttataaatagacattaaat |
459 |
Q |
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| T |
784423 |
atatcttagtgattaagtggatcccacaaaactatcacttatttatctctcttataaatagacattaaat |
784492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 594 - 665
Target Start/End: Original strand, 784488 - 784559
Alignment:
| Q |
594 |
taaattgatatactcatgcatccaatagacaaaaacaattatggttgttttggctcctctatattattatat |
665 |
Q |
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| T |
784488 |
taaattgatatactcatgcatccaatagacaaaaacaattatggttgttttggctcctctatattattatat |
784559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 784042 - 784112
Alignment:
| Q |
17 |
accaacatcattgatccaattggtagataactgaatttctaattgaaagaacatctgccaagatgtcaacc |
87 |
Q |
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| T |
784042 |
accaacatcattgatccaattggtagataactgaatttctaattgaaagaacatctgccaagatgtcaacc |
784112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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