View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19403_high_9 (Length: 577)

Name: NF19403_high_9
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19403_high_9
NF19403_high_9
[»] chr1 (18 HSPs)
chr1 (11-564)||(47568713-47569263)
chr1 (83-477)||(23786687-23787072)
chr1 (42-440)||(28231180-28231569)
chr1 (229-483)||(28238719-28238973)
chr1 (51-451)||(21159167-21159567)
chr1 (61-137)||(6326784-6326860)
chr1 (48-128)||(28239056-28239136)
chr1 (63-128)||(14508844-14508909)
chr1 (56-125)||(677203-677272)
chr1 (63-128)||(671025-671090)
chr1 (48-128)||(2289012-2289089)
chr1 (65-142)||(28326285-28326365)
chr1 (83-140)||(24621795-24621852)
chr1 (199-274)||(28326159-28326234)
chr1 (84-128)||(4251618-4251662)
chr1 (185-334)||(6326899-6327051)
chr1 (67-116)||(12535516-12535565)
chr1 (63-128)||(12540547-12540612)
[»] chr5 (2 HSPs)
chr5 (63-127)||(1717877-1717941)
chr5 (408-464)||(1717565-1717621)
[»] chr3 (1 HSPs)
chr3 (63-137)||(47924945-47925019)
[»] chr2 (1 HSPs)
chr2 (63-128)||(9066269-9066334)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 11 - 564
Target Start/End: Complemental strand, 47569263 - 47568713
Alignment:
11 cataggttagattttgatatgtggtataattaggctcgatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatcttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47569263 cataggttagattttgatatgtggtataattaggctcgatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatcttt 47569164  T
111 gcagagtctgaatatgatggagttataacagcacttgagagtatcagtaaaatcacagtcatcttttggttccttgtcaatcagtggtgcctgtctcaac 210  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
47569163 gcagagtctgaatatg---gagttataacagcacttgagagtatcagtaacatcacagtcatcttttggttccttgtcaatcagtagtgcctgtctcaac 47569067  T
211 atattgatggctaattgagtttctcctatctcacataatccattgatcagaataagataactatcatggttcaacagaaaaccgtttttaagtatgatgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47569066 atattgatggctaattgagtttctcctatctcacataatccattgatcagaataagataactatcatggttcaacagaaaaccgtttttaagtatgatgt 47568967  T
311 cattgtaaaacagcattgctttgtcagtctgtcgtctgccacaaaaaccatctaaaagatgattcaaagtttgtgtagtaggattatcactggtgtcgat 410  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
47568966 cattgtaaaacagcattgctttgtcagtctgtcgtctgcgacaaaaaccaactaaaagatgattcaaagtttgtgtagtaggattatcaccggtgtcgat 47568867  T
411 gattttatggaataaagagatagctgaagacattttaccttgtctagagtgacactggatgaggatagcccaaatatgactgtctggtttatgatgatcg 510  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
47568866 gattttatggaataaagagatatctgaagacattttaccttgtctagagtgacactggatgaggatagcccaagtatgactgtctggtttatgatgatcg 47568767  T
511 ttgaattcggatgattcttccaattgtttgaaagggaaagaacagtggtgaatg 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47568766 ttgaattcggatgattcttccaattgtttgaaagggaaagaacagtggtgaatg 47568713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 83 - 477
Target Start/End: Complemental strand, 23787072 - 23786687
Alignment:
83 cataggcttggtttacaagtctatctttgcagagtctgaatatgatggagttataacagcacttgagagtatcagtaaaatcacagtcatcttttggttc 182  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||  || ||||||         || ||||   ||||| ||||||    
23787072 cataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataacaagacgtgagag---------aaacacaagtatcttctggttc 23786982  T
183 cttgtcaatcagtggtgcctgtctcaacatattgatggctaattgagtttctcctatctcacataatccattgatcagaataagataactatcatggttc 282  Q
    | | ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||  |||||||  ||||| |    
23786981 cctttcaatcagcagtgcctgtctcaacatgttgatggctaattgagtttctcctatctcacataatccatcgacaagaatattataactacgatggtcc 23786882  T
283 aacagaaaaccgtttttaagtatgatgtcattgtaaaacagcattgctttgtcagtctgtcgtctgccacaaaaaccatctaaaagatgattcaaagttt 382  Q
    ||  || |||| |||||||||||||||||||| |||||| |||||||||||||  |||| | |||   ||||||||| ||||| |||  ||| |||||||    
23786881 aaaggataaccctttttaagtatgatgtcattataaaacggcattgctttgtctatctgacttctaagacaaaaaccttctaagagagcatttaaagttt 23786782  T
383 gtgtagtaggattatcactggtgtcgatgattttatggaataaagagatagctgaagacattttaccttgtctagagtgacactggatgaggata 477  Q
      | |||||||| || || || |||||||||||||| ||||||| ||| |||||||||||| ||||||  |  ||||||||||||||||||||||    
23786781 cagcagtaggataatgaccggagtcgatgattttattgaataaatagagagctgaagacatgttacctcttagagagtgacactggatgaggata 23786687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 42 - 440
Target Start/End: Complemental strand, 28231569 - 28231180
Alignment:
42 aggctcgatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgatggagttataacag 141  Q
    ||||| |||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||     
28231569 aggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataacac 28231470  T
142 cacttgagagtatcagtaaaatcacagtcatcttttggttccttgtcaatcagtggtgcctgtctcaacatattgatggctaattgagtttctcctatct 241  Q
    ||| ||| | ||      ||||    |  || |||||||| ||||||||||  | |||||| ||||||||  | ||| |||  |||||||||||||||||    
28231469 cacatgaaatta-----gaaat----gcgatattttggtttcttgtcaatctctagtgcctttctcaacaactggattgctgtttgagtttctcctatct 28231379  T
242 cacataatccattgatcagaataagataactatcatggttcaacagaaaaccgtttttaagtatgatgtcattgtaaaacagcattgctttgtcagtctg 341  Q
    |||||||||||||| | ||||||  |||||| |||| ||||||| ||||||| ||||||||||||||  |||||||||| |||| ||| || | | |||     
28231378 cacataatccattgcttagaatataataactttcatcgttcaactgaaaaccctttttaagtatgataccattgtaaaagagcaatgcattatgaatctc 28231279  T
342 tcgtctgccacaaaaaccatctaaaagatgattcaaagtttgtgtagtaggattatcactggtgtcgatgattttatggaataaagagatagctgaaga 440  Q
      || || ||| ||||||   || ||||||||||||| ||||||||||||||| || || ||||||||||||||||| ||||| ||||| |||||||||    
28231278 atgtttgtcacgaaaacctcgtagaagatgattcaaattttgtgtagtaggatgataaccggtgtcgatgattttattgaatagagagaaagctgaaga 28231180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 229 - 483
Target Start/End: Complemental strand, 28238973 - 28238719
Alignment:
229 gtttctcctatctcacataatccattgatcagaataagataactatcatggttcaacagaaaaccgtttttaagtatgatgtcattgtaaaacagcattg 328  Q
    ||||||||||||| ||||||||| ||||| |||| ||||||||  | ||||| |||| ||||||| |||||||||||||||| |||||||||  ||||||    
28238973 gtttctcctatcttacataatcctttgattagaacaagataacacttatggtccaactgaaaaccctttttaagtatgatgtaattgtaaaagtgcattg 28238874  T
329 ctttgtcagtctgtcgtctgccacaaaaaccatctaaaagatgattcaaagtttgtgtagtaggattatcactggtgtcgatgattttatggaataaaga 428  Q
    | |||| | ||||  ||||  |||||||||||| |||||||  || ||||||    | |||||||| || || |||||||||||| |||||||| | |||    
28238873 ccttgtgaatctgatgtctatcacaaaaaccatataaaagagaatacaaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagaga 28238774  T
429 gatagctgaagacattttaccttgtctagagtgacactggatgaggatagcccaa 483  Q
    ||||||||||||||| ||||| |    ||| ||||| | ||||||||||||||||    
28238773 gatagctgaagacatgttaccatcgacagaatgacatttgatgaggatagcccaa 28238719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 51 - 451
Target Start/End: Original strand, 21159167 - 21159567
Alignment:
51 gttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcag---agtctgaatatgatggagttataacagcacttg 147  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||   || ||||||||||  |  ||||||||| || ||    
21159167 gttgttaacatgaagaatttcagaatataaatcataggcttggtttataagtctatctttgcaggctagcctgaatatgactgtattataacagaacgtg 21159266  T
148 agagtatcagtaaaatcacagtcatcttttggttccttgtcaatcagtggtgcctgtctcaacatattgatggctaattgagtttctcctatctcacata 247  Q
    |      |||||||| || |  ||| ||     ||  | |||||| ||   |||| ||||||||  | ||||||| |||||||||||||||||  |||||    
21159267 a------cagtaaaaccataaccattttccctgtcaatctcaatctgtaaagcctttctcaacaactggatggctgattgagtttctcctatccgacata 21159360  T
248 atccattgatcagaataagataactatcatggttcaacagaaa---accgtttttaagtatgatgtcattgtaaaacagcattgctttgtcagtctgtcg 344  Q
    ||||| |||| ||||||| |||||||||||||||||||  |||   ||| ||| | | |||||||||||||||||| ||||||| ||||| ||| |  |     
21159361 atccagtgattagaataatataactatcatggttcaactaaaaaccaccatttattattatgatgtcattgtaaaagagcattgatttgtgagtttcacc 21159460  T
345 tctgccacaaaaaccatctaaaagatgattcaaagtttgtgtagtaggattatcactggtgtcgatgattttatggaataaagagatagctgaagacatt 444  Q
    | ||| |||||||||||| | |||| ||||||||||||  ||| |||||| || || ||||| |||||| |||  ||||| |||||| || ||||||||     
21159461 tttgcgacaaaaaccatcgagaagaagattcaaagtttcagtactaggatgattaccggtgttgatgatattacagaatagagagatggcagaagacatg 21159560  T
445 ttacctt 451  Q
    |||||||    
21159561 ttacctt 21159567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 6326784 - 6326860
Alignment:
61 tgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgatggagttata 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||    
6326784 tgaatcatttcagaatataaatcataggcttggtttgcaagtctatctttgcagagtctgagtatgatcgagttata 6326860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 28239136 - 28239056
Alignment:
48 gatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgat 128  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
28239136 gatgttgttaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgat 28239056  T

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Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 14508844 - 14508909
Alignment:
63 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgat 128  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
14508844 aatcatttcagaatataaatcataggcttggtttacacgtctatctttgcatagtctgaatatgat 14508909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 677272 - 677203
Alignment:
56 taacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatat 125  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
677272 taacatgaatcatttcagaatataaatcataggcttgatgtacaagtctatctttgcagagtctaaatat 677203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 671025 - 671090
Alignment:
63 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgat 128  Q
    |||||||||| |||||||| ||||| ||||||||||||||||||||||||| || |||||||||||    
671025 aatcatttcaaaatataaaccatagccttggtttacaagtctatctttgcacagcctgaatatgat 671090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 2289012 - 2289089
Alignment:
48 gatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgat 128  Q
    ||||||||||||   |||||||| |||||||||||||||||||||| ||||||||||||| |||| ||| |||| ||||||    
2289012 gatgttgttaac---aatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgat 2289089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 28326365 - 28326285
Alignment:
65 tcatttcagaatataaatcataggcttggtttacaagtctatctttgca---gagtctgaatatgatggagttataacagc 142  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    || ||||||||||| | |||||||||||    
28326365 tcatttcagaatataaatcataagcttggtttataagtctatctttgcaagctagcctgaatatgattgtgttataacagc 28326285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 24621795 - 24621852
Alignment:
83 cataggcttggtttacaagtctatctttgcagagtctgaatatgatggagttataaca 140  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||    
24621795 cataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca 24621852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 28326234 - 28326159
Alignment:
199 gcctgtctcaacatattgatggctaattgagtttctcctatctcacataatccattgatcagaataagataactat 274  Q
    |||| ||||||||  | ||||||| |||||||||||||||||  |||||||||| |||| ||||||||||||||||    
28326234 gcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataagataactat 28326159  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 4251618 - 4251662
Alignment:
84 ataggcttggtttacaagtctatctttgcagagtctgaatatgat 128  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
4251618 ataggcttggtttacaagtctatctttgcagagcctggatatgat 4251662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 334
Target Start/End: Original strand, 6326899 - 6327051
Alignment:
185 tgtcaatcagtggtgcctgtctcaacatattgatggctaattgagtttctcc---tatctcacataatccattgatcagaataagataactatcatggtt 281  Q
    ||| |||| || ||||||||||||| |  | |||||||| ||| ||||||||   ||||||||||| ||| | ||||||||||  |||| ||  || ||     
6326899 tgttaatctgtagtgcctgtctcaaaagctggatggctatttgggtttctcctcctatctcacatactccttggatcagaatagaataagtacgattgtc 6326998  T
282 caacagaaaaccgtttttaagtatgatgtcattgtaaaacagcattgctttgt 334  Q
    |||| ||||||| | |||||||| ||||||||| ||||| || ||||||||||    
6326999 caactgaaaaccctgtttaagtacgatgtcattataaaagaggattgctttgt 6327051  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 12535516 - 12535565
Alignment:
67 atttcagaatataaatcataggcttggtttacaagtctatctttgcagag 116  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||| ||||||    
12535516 atttcagaaaataaagcataggcttcgtttacaagtctatcttcgcagag 12535565  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 12540612 - 12540547
Alignment:
63 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgat 128  Q
    ||||||||||||| ||||||||||||||| ||||| | |||| ||  |||||||| ||| ||||||    
12540612 aatcatttcagaaaataaatcataggcttcgtttatatgtctttccatgcagagtgtgattatgat 12540547  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 1717941 - 1717877
Alignment:
63 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
1717941 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcatagtctgaatatga 1717877  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 464
Target Start/End: Complemental strand, 1717621 - 1717565
Alignment:
408 gatgattttatggaataaagagatagctgaagacattttaccttgtctagagtgaca 464  Q
    ||||| ||||| ||||||||||| |||||||| ||| |||| || ||||||||||||    
1717621 gatgagtttatagaataaagagaaagctgaagccatcttacattttctagagtgaca 1717565  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 47924945 - 47925019
Alignment:
63 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgatggagttata 137  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||||||||  ||| |||||| ||||||||    
47924945 aatcatttcagaatagaagtcataggcttgatttactagtctatctttgcagagggtgagtatgattgagttata 47925019  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 9066334 - 9066269
Alignment:
63 aatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatgat 128  Q
    ||||||||  ||||||||||||||||||||||||||| ||||| |||| || ||||||||||||||    
9066334 aatcatttgtgaatataaatcataggcttggtttacaggtctacctttacatagtctgaatatgat 9066269  T

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