View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_10 (Length: 537)
Name: NF19403_low_10
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 1602993 - 1603290
Alignment:
| Q |
16 |
caaaggtaaccataataaaaatggcnnnnnnnntcttcataactttaagcatgaagcatagctaataaatattactaggttcaagcaacttcaacttaca |
115 |
Q |
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| T |
1602993 |
caaaggtaaccataataaaaatggcaaaaaaaatcttcataactttaagcatgaagcatagctaataaatattactaggttcaagcaacttcaacttaca |
1603092 |
T |
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| Q |
116 |
acataggcctgtttggataaccaacttataaagttaaaatgcttttgtataagctataagctttttatgataataagctgaaaacaacttctttcataag |
215 |
Q |
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| T |
1603093 |
acataggcctgtttggataaccaacttataaagttaaaatgcttttgtataagctataagctttttatgataataagctgaaaacaacttctttcataag |
1603192 |
T |
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| Q |
216 |
ttctcacc-nnnnnnnnnngttaacagtctagcaaatgtttatagcattaaataacctcaaataagtcaaaccaaatacgcgcataataattaattgatg |
314 |
Q |
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| T |
1603193 |
ttctcaccaaaaaaaaaaagttaacagtctagcaaatgtttatagcattaaataacctcaaataagttaaaccaaatacgcgcata--aattaattgatg |
1603290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 1603352 - 1603416
Alignment:
| Q |
376 |
attggaaattcattttcaccgtttccttattatccaaacactacatcaaccagatttctacgttc |
440 |
Q |
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| T |
1603352 |
attggaaattcattttcaccgtttccttattatccaaacactacatcaaccagatttctacgttc |
1603416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 45541667 - 45541720
Alignment:
| Q |
237 |
aacagtctagcaaatgtttatagcattaaataacctcaaataagtcaaaccaaa |
290 |
Q |
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| T |
45541667 |
aacagtcttacaagtgtttataccattaaataagctcaaataagtcaatccaaa |
45541720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 9572205 - 9572172
Alignment:
| Q |
143 |
ataaagttaaaatgcttttgtataagctataagc |
176 |
Q |
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| T |
9572205 |
ataaagttaaattgcttttgtataagctataagc |
9572172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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