View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19403_low_13 (Length: 518)

Name: NF19403_low_13
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19403_low_13
NF19403_low_13
[»] chr6 (19 HSPs)
chr6 (3-498)||(29364683-29365170)
chr6 (102-453)||(29346248-29346598)
chr6 (102-438)||(24258007-24258345)
chr6 (239-453)||(29899045-29899259)
chr6 (264-436)||(24262632-24262804)
chr6 (266-438)||(29888121-29888289)
chr6 (264-438)||(24271108-24271280)
chr6 (309-448)||(29355074-29355213)
chr6 (104-212)||(24270974-24271086)
chr6 (310-397)||(29916468-29916556)
chr6 (263-317)||(29916584-29916638)
chr6 (262-306)||(30132665-30132709)
chr6 (457-496)||(24258357-24258396)
chr6 (452-498)||(29930166-29930212)
chr6 (20-85)||(24262465-24262528)
chr6 (459-496)||(29346643-29346680)
chr6 (457-496)||(24262818-24262857)
chr6 (18-83)||(29346147-29346211)
chr6 (425-453)||(29930250-29930278)
[»] scaffold0054 (2 HSPs)
scaffold0054 (149-368)||(52633-52844)
scaffold0054 (457-487)||(50957-50987)
[»] chr4 (1 HSPs)
chr4 (263-438)||(19219643-19219817)


Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 3 - 498
Target Start/End: Original strand, 29364683 - 29365170
Alignment:
Q  3 agttgttggtgataatctaagtgtgcagctgaggccatcaaactaagaaagatatttcaaagaatgaaaacacatgtatttttnnnnnnnnnnnnnnnng 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |    
T  29364683 agttgttggtgataatctaagtgtgcagctgaggccatcaaactaagaaagatatttcaaagaatgaaaacacatgtatttt--------caaaaaaaag 29364774  T
Q  103 gtgaatcatgaaccatattcaggaatatgagaggctgttattgttaaaaaagggagcaggtgctgccatcctaaaccattcatcacatttgtggtatatc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29364775 gtgaatcatgaaccatattcaggaatatgagaggctgttattgttaaaaaagtgagcaggtgctgccatcctaaaccattcatcacatttgtggtatatc 29364874  T
Q  203 aagagaagatacttgatacacaaatgttccatcactgataaagaccaggataaatatttaggaaatgagtatctgcagaatatgacagacctttcaaaag 302  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364875 aagagaagatacttgatacacaaatgttccatcaaagataaagaccaggataaatatttaggaaatgagtatctgcagaatatgacagacctttcaaaag 29364974  T
Q  303 ctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgcataactgtgggaaatgaggtattcaatagcaatgatactc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364975 ctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgcataactgtgggaaatgaggtattcaatagcaatgatactc 29365074  T
Q  403 agataatgttgaaccttctcccatcaatgcaaaatgagcatggttttagtctagcaaagaatgcacatccactcatacctagtggctacctatcct 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29365075 agataatgttgaaccttctcccatcaatgcaaaatgagcatggttttagtctatcaaagaatgcacatccactcatacctagtggctacctatcct 29365170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 102 - 453
Target Start/End: Original strand, 29346248 - 29346598
Alignment:
Q  102 ggtgaatcatgaaccatattcaggaatatgagaggctgttattgttaaaaaagggagcaggtgctgccatcctaaaccattcatcacatttgtggtatat 201  Q
    ||||||| |||||||||| ||| |||||||| | || || ||| ||||||||||  ||||||||||||||||||| |||||||||| |||| ||||||||    
T  29346248 ggtgaattatgaaccatactcatgaatatgatatgccgtcattattaaaaaaggt-gcaggtgctgccatcctaagccattcatcatatttatggtatat 29346346  T
Q  202 caagagaagatacttgatacacaaatgttccatcactgataaagaccaggataaatatttaggaaatgagtatctgcagaatatgacagacctttcaaaa 301  Q
     ||||||||||||| ||||||||||||||||||||  ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  29346347 aaagagaagatactagatacacaaatgttccatcaaagataaagaccaggaaccatatttaggaaatgagtatctgcagaatatgacagacctttcaaaa 29346446  T
Q  302 gctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgcataactgtgggaaatgaggtattcaatagcaatgatact 401  Q
    ||||  |||||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29346447 gctcggacttggattcaggaccatgttccaccttacctttcacaaatcaaaatgactttgcataactgtgggaaatgaggtattcaatagcaatgatact 29346546  T
Q  402 cagataatgttgaaccttctcccatcaatgcaaaatgagcatggttttagtc 453  Q
     ||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  29346547 tagataatgttgaaacttctcccaccaatgcaaaatgagcatgcttttagtc 29346598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 102 - 438
Target Start/End: Original strand, 24258007 - 24258345
Alignment:
Q  102 ggtgaatcatgaaccatattcaggaatatgagaggctgttattgttaaaaaagggagcaggtgctgccatcctaaaccattcatcacatttgtggtatat 201  Q
    ||||||||||||||||||||||||||| ||||||| ||  ||||||||||| | ||||||| |||||||||||||||||||||||| |||| |||| |||    
T  24258007 ggtgaatcatgaaccatattcaggaatgtgagaggttgacattgttaaaaatgtgagcaggagctgccatcctaaaccattcatcatatttatggtgtat 24258106  T
Q  202 caagagaaga-tacttgatacacaaatgttccatcactgataaa-gaccaggataaatatttaggaaatgagtatctgcagaatatgacagacctttcaa 299  Q
    |||||||||| |||| |||||||||||||| |||||  |||||  ||||| ||   ||||| | ||||||||||| ||||||||||||||||||||||||    
T  24258107 caagagaagaatactagatacacaaatgtttcatcaaagataattgaccatgaaccatattcaagaaatgagtatatgcagaatatgacagacctttcaa 24258206  T
Q  300 aagctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgcataactgtgggaaatgaggtattcaatagcaatgata 399  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  24258207 aagctcagacttggattcagcaccatgttcaaccttacctttcacagatcaaaattactttgcataactgtgggaaatgaggtattcaatagcaatgata 24258306  T
Q  400 ctcagataatgttgaaccttctcccatcaatgcaaaatg 438  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  24258307 ctcagataatgttgaaccttttcccatcaatgcaaaatg 24258345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 239 - 453
Target Start/End: Complemental strand, 29899259 - 29899045
Alignment:
Q  239 gataaagaccaggataaatatttaggaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacc 338  Q
    ||||| ||||||||   ||||| | ||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||| |||||||||||||| |    
T  29899259 gataatgaccaggaaccatattcaagaaatgagtatctgcagaatatgacagacctttcaaaagatctaacttggattcagcaccatgttcaaccttatc 29899160  T
Q  339 tttcacagatcaaaatgattttgcataactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccatcaatgcaaaatg 438  Q
    |||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  29899159 tttcgcaaatcaaaataactttgcataactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccaccaatgcaaaacg 29899060  T
Q  439 agcatggttttagtc 453  Q
     ||||||||||||||    
T  29899059 tgcatggttttagtc 29899045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 24262632 - 24262804
Alignment:
Q  264 gaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgca 363  Q
    ||||||||||||||||||||||   |||||||||||||| ||  |||||||||||||  |||||||||||||| |||||| | |||||||| | ||||||    
T  24262632 gaaatgagtatctgcagaatatagaagacctttcaaaagatctaacttggattcagcgccatgttcaaccttatctttcataaatcaaaattactttgca 24262731  T
Q  364 taactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccatcaatgcaaaa 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24262732 taactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccaccaatgcaaaa 24262804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 266 - 438
Target Start/End: Complemental strand, 29888289 - 29888121
Alignment:
Q  266 aatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgcata 365  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||||||||  ||||||||| |||||||||| || |||||||| | ||||||||    
T  29888289 aatgagtatatgcagaatatgacagacct--caaaagctcagacttggattcagc--catgttcaaacttacctttcgcaaatcaaaataactttgcata 29888194  T
Q  366 actgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccatcaatgcaaaatg 438  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29888193 actgtgggaaatgaggtattcaatagaaatgatactcagataatgttgaaccttttcccatcaatgcaaaatg 29888121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 264 - 438
Target Start/End: Original strand, 24271108 - 24271280
Alignment:
Q  264 gaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgca 363  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||  | ||||||| |||||||||| || |||||||| | ||| ||    
T  24271108 gaaatgagtatatgcagaatatgacagacctttcaaaagctcagacttggattcagc--cttgttcaaacttacctttcgcaaatcaaaataactttcca 24271205  T
Q  364 taactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccatcaatgcaaaatg 438  Q
    ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  24271206 taattgtgggagatgaggtattcaatagcaatgatactcggataatgttgaaccttttcccatcaatgcaaaatg 24271280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 29355074 - 29355213
Alignment:
Q  309 cttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgcataactgtgggaaatgaggtattcaatagcaatgatactcagataa 408  Q
    ||||||| ||||| ||||| ||||||||||||||| | | |||||  |  |||||||||| |||||||||||||||||||||||||||| ||||||  ||    
T  29355074 cttggatacagcaccatgtccaaccttacctttcaga-aacaaaaataacttgcataactctgggaaatgaggtattcaatagcaatgagactcagccaa 29355172  T
Q  409 tgttgaaccttctcccatcaatgc-aaaatgagcatggttt 448  Q
    ||||||||||||| |||||||||| |||||| |||||||||    
T  29355173 tgttgaaccttcttccatcaatgcaaaaatgtgcatggttt 29355213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 24270974 - 24271086
Alignment:
Q  104 tgaatcatgaaccatattcaggaatatgagaggctgtt----attgttaaaaaagggagcaggtgctgccatcctaaaccattcatcacatttgtggtat 199  Q
    |||||||||||| |||||||||||||||||| | ||||    |||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||    
T  24270974 tgaatcatgaactatattcaggaatatgagaagttgtttgtcattgttaaaaagatgagcaggtgctgccatcctaaaccattcatcatatttatggtat 24271073  T
Q  200 atcaagagaagat 212  Q
    |||||||||||||    
T  24271074 atcaagagaagat 24271086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 29916556 - 29916468
Alignment:
Q  310 ttggattcagcagcatgttcaaccttacctttcacagatc-aaaatgattttgcataactgtgggaaatgaggtattcaatagcaatga 397  Q
    |||||||| ||| ||||||||||||||| ||||||| ||| ||||| | ||||||||||||| ||| ||||||||||||||| ||||||    
T  29916556 ttggattcggcaccatgttcaaccttacttttcacaaatcgaaaataactttgcataactgtcggagatgaggtattcaataacaatga 29916468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 29916638 - 29916584
Alignment:
Q  263 ggaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattc 317  Q
    ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  29916638 ggaaatgagcatctgcagaatatgacagacctttcaaaagctctaacttggattc 29916584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 30132709 - 30132665
Alignment:
Q  262 aggaaatgagtatctgcagaatatgacagacctttcaaaagctca 306  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
T  30132709 aggaaatgagtatctgctgaatatgacagacctttcaaaaactca 30132665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 496
Target Start/End: Original strand, 24258357 - 24258396
Alignment:
Q  457 caaagaatgcacatccactcatacctagtggctacctatc 496  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  24258357 caaagaatgcacatccactcatacctagtgactacctatc 24258396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 29930212 - 29930166
Alignment:
Q  452 tctagcaaagaatgcacatccactcatacctagtggctacctatcct 498  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||    
T  29930212 tctatcaaaaaatgcacatccactcatacctagtgactacctatcct 29930166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 24262465 - 24262528
Alignment:
Q  20 taagtgtgcagctgaggccatcaaactaagaaagatatttcaaagaatgaaaacacatgtattttt 85  Q
    |||||||||||||||||||||| |||||| |||||||||| ||| || |||||||| |||||||||    
T  24262465 taagtgtgcagctgaggccatc-aactaaaaaagatattt-aaaaaaagaaaacacgtgtattttt 24262528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 29346643 - 29346680
Alignment:
Q  459 aagaatgcacatccactcatacctagtggctacctatc 496  Q
    |||||||||||||||||||||||||||| |||||||||    
T  29346643 aagaatgcacatccactcatacctagtgactacctatc 29346680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 496
Target Start/End: Original strand, 24262818 - 24262857
Alignment:
Q  457 caaagaatgcacatccactcatacctagtggctacctatc 496  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  24262818 caaagaatgcacatccattcatacctagtgactacctatc 24262857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 29346147 - 29346211
Alignment:
Q  18 tctaagtgtgcagctgaggccatcaaactaagaaagatatttcaaagaatgaaaacacatgtattt 83  Q
    ||||||||||| |||||||||||| |||||| | | |||||||||| ||||| || ||||||||||    
T  29346147 tctaagtgtgccgctgaggccatc-aactaaaatacatatttcaaaaaatgataatacatgtattt 29346211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 453
Target Start/End: Complemental strand, 29930278 - 29930250
Alignment:
Q  425 atcaatgcaaaatgagcatggttttagtc 453  Q
    |||||||||||||||||||||||||||||    
T  29930278 atcaatgcaaaatgagcatggttttagtc 29930250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 149 - 368
Target Start/End: Original strand, 52633 - 52844
Alignment:
Q  149 aaaaagggagcaggtgctgccatcctaaaccattcatcacatttgtggtatatcaagagaagatacttgatacacaaatgttccatcactgataaagacc 248  Q
    |||||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||       ||||||||||||||||  || |||| ||    
T  52633 aaaaagtgtgcaggtgctgccatcctaaaccattcatcatatttatggtatatcaagagaagata-------cacaaatgttccatcaaagacaaaggcc 52725  T
Q  249 aggataaatatttaggaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacctttcacagat 348  Q
    ||||   ||||| |||||||||| | ||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||    
T  52726 aggaaccatattcaggaaatgagcaactgcagaatatgatagacctttcaaaaactcagacttggattcagcaccatgttcaa-cttacctttcacaaat 52824  T
Q  349 caaaatgattttgcataact 368  Q
     ||||||| |||||||||||    
T  52825 gaaaatgactttgcataact 52844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 487
Target Start/End: Original strand, 50957 - 50987
Alignment:
Q  457 caaagaatgcacatccactcatacctagtgg 487  Q
    |||||||||||||||||||||||||||||||    
T  50957 caaagaatgcacatccactcatacctagtgg 50987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 263 - 438
Target Start/End: Original strand, 19219643 - 19219817
Alignment:
Q  263 ggaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgc 362  Q
    ||||||||| || | || ||||||||| ||| ||| |||||||| | ||||||||| || ||||||| ||||||||||||||| | |||||| | || ||    
T  19219643 ggaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gc 19219741  T
Q  363 ataactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccatcaatgcaaaatg 438  Q
    |||||||| |||||||| |||||||||||||||||||||||  |||| ||||| ||||| || |||||||||||||    
T  19219742 ataactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatg 19219817  T

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