View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_15 (Length: 506)
Name: NF19403_low_15
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_15 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Complemental strand, 29908 - 29482
Alignment:
| Q |
15 |
gtaataaggattttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttattaagaaatattta |
114 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29908 |
gtaataaggattttcagaataattggattaatgggaggggtgtcaaaattaatttccacaatataaaaaattgtgaatgaatgttattcagaaatattta |
29809 |
T |
|
| Q |
115 |
ctatgagattcatgagaaatgacatcttagtatttttggatatagaggaacaacgactttatcatggtgatcgttatctatatcggatcattataacata |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29808 |
ctatgagattcatgagaaatgacatcttagtatttttggatatagaggaacaatgactttatcatcgtgatcgttatctatatcggatcattataacata |
29709 |
T |
|
| Q |
215 |
tttgtatatagagtggttttaggagaatatcagattcatgggaaaagtcaattgaatttcatgcccctaacaaataaatttaatctcaatcagcagtaca |
314 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29708 |
tttgtatatagagtggttttcggaggatatcagattcatgggaaaagtcaattgaatttcatgcccctaacaaataaatttaatctaaatcagcagtaca |
29609 |
T |
|
| Q |
315 |
tttgaatcaattaatattgctgaagaataagtaaaagagatacaaaacaaagttgaagcatataacagaccaagttacagagattacagtnnnnnnnnta |
414 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
29608 |
tttgaatcaattaatattgctgaagaataagta----------caaacaaagttgaagcatataacagaccaagttacagtgattacagtaaaaaaaata |
29519 |
T |
|
| Q |
415 |
gcttgcacatcaagttaaaggtagaatgcggcatcaa |
451 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
29518 |
gcctgcacatcaagttaaaggtagaatgcggcatcaa |
29482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 12533559 - 12533909
Alignment:
| Q |
15 |
gtaataaggattttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttattaagaaatattta |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12533559 |
gtaataaggattttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttattcagaaatattta |
12533658 |
T |
|
| Q |
115 |
ctatgagattcatgagaaatgacatcttagtatttttggatata------------------gaggaacaacgactttatcatggtgatcgttatctata |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
12533659 |
ctatgagattcatgagaaatgacatcttagtatttttggatatagaggaacaacgacttatagaggaacaacgactttatcgtggtgatcgttatctata |
12533758 |
T |
|
| Q |
197 |
tcggatcattataacatatttgtatatagagtggttttaggagaatatcagattcatgggaaaagtcaattgaatttcatgcccctaacaaataaattta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12533759 |
tcggatcattataacatatttgtatatagagtggttttaggagaatatcagattcatgggaaaagtcaattgaatttcatgcccctaacaaataaattta |
12533858 |
T |
|
| Q |
297 |
atctcaatcagcagtacatttgaatcaattaatattgctgaagaataagta |
347 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12533859 |
atctaaatcagcagtacgtttgaatcaattaatattgctgaagaataagta |
12533909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 12534547 - 12534897
Alignment:
| Q |
15 |
gtaataaggattttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttattaagaaatattta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12534547 |
gtaataaggattttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttattcagaaatattta |
12534646 |
T |
|
| Q |
115 |
ctatgagattcatgagaaatgacatcttagtatttttggatata------------------gaggaacaacgactttatcatggtgatcgttatctata |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
12534647 |
ctatgagattcatgagaaatgacatcttagtatttttggatatagaggaacaacgacttatagaggaacaacgactttatcgtggtgatcgttatctata |
12534746 |
T |
|
| Q |
197 |
tcggatcattataacatatttgtatatagagtggttttaggagaatatcagattcatgggaaaagtcaattgaatttcatgcccctaacaaataaattta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12534747 |
tcggatcattataacatatttgtatatagagtggttttaggagaatatcagattcatgggaaaagtcaattgaatttcatgcccctaacaaataaattta |
12534846 |
T |
|
| Q |
297 |
atctcaatcagcagtacatttgaatcaattaatattgctgaagaataagta |
347 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12534847 |
atctaaatcagcagtacgtttgaatcaattaatattgctgaagaataagta |
12534897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 12533943 - 12534075
Alignment:
| Q |
367 |
ttgaagcatataacagaccaagttacagagattacagtnnnnnnnntagcttgcacatcaagttaaaggtagaatgcggcatcaaactgtggcatcaatg |
466 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
12533943 |
ttgaagcatataacagacaaagttacggtgattacagtaaaaaaaatagcctgcacatcaagttaaaggtagaatgcggcatcaaactgcggcatcaatg |
12534042 |
T |
|
| Q |
467 |
gtggaatgaatacttcagttgcttttcttctca |
499 |
Q |
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|||||||||||||||||||||| ||| |||||| |
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| T |
12534043 |
gtggaatgaatacttcagttgcgtttattctca |
12534075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 12534931 - 12535063
Alignment:
| Q |
367 |
ttgaagcatataacagaccaagttacagagattacagtnnnnnnnntagcttgcacatcaagttaaaggtagaatgcggcatcaaactgtggcatcaatg |
466 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
12534931 |
ttgaagcatataacagacaaagttacggtgattacagtaaaaaaaatagcctgcacatcaagttaaaggtagaatgcggcatcaaactgcggcatcaatg |
12535030 |
T |
|
| Q |
467 |
gtggaatgaatacttcagttgcttttcttctca |
499 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| |
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|
| T |
12535031 |
gtggaatgaatacttcagttgcgtttattctca |
12535063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 499
Target Start/End: Complemental strand, 29687540 - 29687344
Alignment:
| Q |
308 |
cagtacatttgaatcaattaatattgctgaagaat-aagtaaaagagatacaaaacaaagttgaagcatataacagaccaagttacagagatt-----ac |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| |||| | ||||||||||||||||||||||||||||| |||| | |
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|
| T |
29687540 |
cagtacatttgaatcaattaatattgctgaagaatcaagtaaaaaagattgaaaa-agagttgaagcatataacagaccaagttacaatgatttcatcaa |
29687442 |
T |
|
| Q |
402 |
agtnnnnnnnntagcttgcacatcaagttaaaggtagaatgcggcatcaaactgtggcatcaatggtggaatgaatacttcagttgcttttcttctca |
499 |
Q |
| |
|
| ||| |||||||||||||||||||| | ||| |||||||| | ||||||||||||||||||||||| |||||| | |||||||||| |
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|
| T |
29687441 |
ataaaaaaggagagcctgcacatcaagttaaaggtaaagtgctgcatcaaatcgcggcatcaatggtggaatgaatacatcagttacatttcttctca |
29687344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 22914824 - 22914739
Alignment:
| Q |
308 |
cagtacatttgaatcaattaatattgctgaagaat-aagtaaaagagatacaaaacaaagttgaagcatataacagaccaagttaca |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||| |||| | ||||||||||||||||||||||||||||| |
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|
| T |
22914824 |
cagtacatttgaatcaattaatattgctgaagaatcaagtaaaaaagattgaaaa-agagttgaagcatataacagaccaagttaca |
22914739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 499
Target Start/End: Complemental strand, 13594247 - 13594166
Alignment:
| Q |
418 |
tgcacatcaagttaaaggtagaatgcggcatcaaactgtggcatcaatggtggaatgaatacttcagttgcttttcttctca |
499 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||| | ||||||||||||||||||||||| |||||| | |||||||||| |
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|
| T |
13594247 |
tgcacatcaagttaaaggtaaagtgctgcatcaaatcgcggcatcaatggtggaatgaatacatcagttacatttcttctca |
13594166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 499
Target Start/End: Complemental strand, 22914709 - 22914628
Alignment:
| Q |
418 |
tgcacatcaagttaaaggtagaatgcggcatcaaactgtggcatcaatggtggaatgaatacttcagttgcttttcttctca |
499 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
22914709 |
tgcacatcaagttaaaggtagagtactgcatcaaatcacggcatcaatggtggaatgaatacatcagttacatttcttctca |
22914628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 393
Target Start/End: Complemental strand, 13594305 - 13594277
Alignment:
| Q |
365 |
agttgaagcatataacagaccaagttaca |
393 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13594305 |
agttgaagcatataacagaccaagttaca |
13594277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 2300519 - 2300452
Alignment:
| Q |
419 |
gcacatcaagttaaaggtagaatgcggcatcaaactgtggcatcaatggtggaatgaatacttcagtt |
486 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| | |||||||||||||||||||||||||||||| |
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|
| T |
2300519 |
gcacatcaagttaaaggtagattgcggtgttaaatcgcggcatcaatggtggaatgaatacttcagtt |
2300452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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