View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19403_low_17 (Length: 489)
Name: NF19403_low_17
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 2041072 - 2041529
Alignment:
| Q |
18 |
ttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggact |
117 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2041072 |
ttaactacttcattagtgcaatttataccaaactgcttctcaaagaactttctccacaattgatctgttatagggctcaaatccatcccttgagtggact |
2041171 |
T |
|
| Q |
118 |
tctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2041172 |
tctcaatatgcatcaactggtcaagtgtgcagtgaggcaagattctctcaagcatatcatgatcaacatgactaacatctccaaggtattttacattatc |
2041271 |
T |
|
| Q |
218 |
aatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttc |
317 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2041272 |
aatacctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttc |
2041371 |
T |
|
| Q |
318 |
tttctcgcagatacttcatcccttctcatcgtaatagcaagtttccttcgaaacaaaagcagtggatcgaaaacaaaggaacaaaaactcaatgagtaaa |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2041372 |
tttctcgcagatacttcgtcccttctcatcgtaatagctagattccttcgaaacaaaagcagtggatcgaaaacaaaggaacaaaaactcaatgagtaaa |
2041471 |
T |
|
| Q |
418 |
agtattagatatgtttttcactgcaaccctaatggattttaacctatatatagtataa |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2041472 |
agtattagatatgtttttcactgcaaccctaatggcttttaacctatatatagtataa |
2041529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 1352585 - 1352250
Alignment:
| Q |
18 |
ttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggact |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | | || |
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|
| T |
1352585 |
ttaactacttcattagtgcaatttataccaaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatccctttatttgtct |
1352486 |
T |
|
| Q |
118 |
tctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1352485 |
tctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
1352386 |
T |
|
| Q |
218 |
aatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1352385 |
aatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttc |
1352286 |
T |
|
| Q |
318 |
tttctcgcagatacttcatcccttctcatcgtaata |
353 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||| |
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|
| T |
1352285 |
cttctcgcagatatttcatctcttctcatcataata |
1352250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 1357706 - 1357444
Alignment:
| Q |
18 |
ttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggact |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357706 |
ttaactacttcattagtgcaatttataccaaattgcttttcaaagaactttttccacaatttatctgttatagggctcaaatccatcccttgagtggact |
1357607 |
T |
|
| Q |
118 |
tctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357606 |
tctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
1357507 |
T |
|
| Q |
218 |
aatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacagg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
1357506 |
aatagctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 1364536 - 1364328
Alignment:
| Q |
18 |
ttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggact |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1364536 |
ttaactacttcattagtgcaatttataccaaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatcccttgagtggact |
1364437 |
T |
|
| Q |
118 |
tctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1364436 |
tctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
1364337 |
T |
|
| Q |
218 |
aatagcttt |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
1364336 |
aatagcttt |
1364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 36717618 - 36717295
Alignment:
| Q |
18 |
ttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggact |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| | | | || |
|
|
| T |
36717618 |
ttaactacttcattagtgcaatttataccaaactgcttttcaaagaattttttccacaatttatcagttatagggctcaaatccatcccttcacttgcct |
36717519 |
T |
|
| Q |
118 |
tctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36717518 |
tctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
36717419 |
T |
|
| Q |
218 |
aatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
36717418 |
aatagctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattcctttgaaaca------------acgatggcttc |
36717331 |
T |
|
| Q |
318 |
tttctcgcagatacttcatcccttctcatcgtaata |
353 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
36717330 |
tttcttgcagatatttcatcccttctcatcataata |
36717295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 24620375 - 24620630
Alignment:
| Q |
18 |
ttaacgacttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggact |
117 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||| |||| ||| ||||||||| || || | |||| ||||||||||||||| || | ||| || |
|
|
| T |
24620375 |
ttaactacttcatttgtgcaaattataccaaactgcttttcaataaactttttccacagtttattcgatatatggctcaaatccatcc-ttcattggcct |
24620473 |
T |
|
| Q |
118 |
tctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
217 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24620474 |
tctcaatatgcatgttccggtcaagtgtgcagtgaggcaagattcactcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatc |
24620573 |
T |
|
| Q |
218 |
aatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
24620574 |
aatagctttctcaacacaaagatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 18180119 - 18180249
Alignment:
| Q |
116 |
cttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacatta |
215 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| ||||| |||||||||| ||| |||| |
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|
| T |
18180119 |
cttctcgatatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaatta |
18180218 |
T |
|
| Q |
216 |
tcaatagctttctcaacacaaagatcaacca |
246 |
Q |
| |
|
|| |||||| | | ||||||||||||||||| |
|
|
| T |
18180219 |
tctatagctgtttgaacacaaagatcaacca |
18180249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 18179946 - 18180026
Alignment:
| Q |
26 |
ttcattagtgcaatttataccaaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatccc |
106 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
18179946 |
ttcatttgtgcaacttataccaaactgcttttcaaagaactttttccacaatttatctgttaccgggctcaaatccatccc |
18180026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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