View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19403_low_18 (Length: 479)

Name: NF19403_low_18
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19403_low_18
NF19403_low_18
[»] chr3 (1 HSPs)
chr3 (10-462)||(110860-111312)
[»] chr6 (2 HSPs)
chr6 (10-462)||(20646554-20647006)
chr6 (423-462)||(19329085-19329124)
[»] scaffold0072 (1 HSPs)
scaffold0072 (8-185)||(1415-1592)


Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Complemental strand, 111312 - 110860
Alignment:
Q  10 ataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111312 ataatattcaccaaacagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac 111213  T
Q  110 aaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111212 aaaataatccactgtcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt 111113  T
Q  210 gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111112 gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa 111013  T
Q  310 tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111012 tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgca 110913  T
Q  410 cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccatac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  110912 cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccatac 110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Original strand, 20646554 - 20647006
Alignment:
Q  10 ataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20646554 ataatattcaccaaacagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac 20646653  T
Q  110 aaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20646654 aaaataatccactgtcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagc 20646753  T
Q  210 gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20646754 gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa 20646853  T
Q  310 tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcgca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20646854 tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattttccgataatttcctgcgca 20646953  T
Q  410 cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccatac 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20646954 cagttgtaacaatccctcctttgaacaaacaatctcttgaccaattatcatac 20647006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 423 - 462
Target Start/End: Complemental strand, 19329124 - 19329085
Alignment:
Q  423 ccctcctttgaacaaacaatctcttgaccaattaccatac 462  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  19329124 ccctcctttgaacaaagaatctcttgaccaattaccatac 19329085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 1592 - 1415
Alignment:
Q  8 agataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagac 107  Q
    |||||||| |||||| | ||| |||||||||||||| ||||||||||||| ||||||  || || | ||||||  |||| ||||||||||  || |||||    
T  1592 agataatattcaccacatagcagctccttataatcttccagattttacaaaaacactctcagcagcaaaggaaagataatcatcatcaccgtatgaagac 1493  T
Q  108 acaaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaa 185  Q
    |||| | ||   ||| ||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  1492 acaacagaacttactgtcataactattgaagaataaaagaaaattaagatttacatgaaaccaaatccattgatggaa 1415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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