View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_19 (Length: 426)
Name: NF19403_low_19
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 13397724 - 13398043
Alignment:
| Q |
18 |
attttaaacaaaacttaaacgtaatatcgtccttaacatggcagttgaaagcggggaactaactatttagtgagcaaagtgatacatatcatatttcttc |
117 |
Q |
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| T |
13397724 |
attttaaacaaaacttaaacgtaatatcgtccttaacatggcagttgaaagcggggaactaactatttagtgagcaaagtaatacatatcatatttcttc |
13397823 |
T |
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| Q |
118 |
aaacttatattaattccatttacatataaattttgttgctgatatatagtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaaga |
217 |
Q |
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| T |
13397824 |
aaacttatattaattccatttacatataaattttgttgctgata----gtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaaga |
13397919 |
T |
|
| Q |
218 |
attgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagca |
317 |
Q |
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| T |
13397920 |
attgaagtataacgatatttttgcaaattaatatatattgagtattcttgttctgcttctgtttagacctagtagtacatccatgttgattagggaagca |
13398019 |
T |
|
| Q |
318 |
agaattattgctaattatttatat |
341 |
Q |
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|||||||||||||||||||||||| |
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| T |
13398020 |
agaattattgctaattatttatat |
13398043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 20374055 - 20373874
Alignment:
| Q |
105 |
atcatatttcttcaaacttatattaattccatttacatataaattttgttgctgatatatagtatgcaggagtgatcctattaccgtatttagagcttgg |
204 |
Q |
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| T |
20374055 |
atcatatttcttcaaacttatgttaattccatttacatcaaaattttgttgctgata----gtattcacgagtgatcttattaccgcatttagagatttg |
20373960 |
T |
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| Q |
205 |
ttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagt |
290 |
Q |
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| T |
20373959 |
ttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttgttctgcttgtttttagacctagt |
20373874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 105 - 344
Target Start/End: Original strand, 20407646 - 20407882
Alignment:
| Q |
105 |
atcatatttcttcaaacttatattaattccatttacatataaattttgttgctgatatatagtatgcaggagtgatcctattaccgt----atttagagc |
200 |
Q |
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||||||| |||||||||||||||||||| ||||||||| |||| | ||||||||||| ||||| | |||||||||||| ||| ||||||||| |
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| T |
20407646 |
atcatatatcttcaaacttatattaattgcatttacatctaaagtctgttgctgata----gtatgaatgagtgatcctataaccaaccacatttagagc |
20407741 |
T |
|
| Q |
201 |
ttggttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagtaatacatcca |
300 |
Q |
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|||||| |||||||||||||||||||||| |||| |||||| ||| |||||||||||| | ||||||||| | ||||| |||||||||| |||||| |
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| T |
20407742 |
ttggttctttatcaagaattgaagtataaagatagttttgcgaattaatatatattgaattttcttgttccgattgtgattagacctag---gtcatcca |
20407838 |
T |
|
| Q |
301 |
tgttgattagggaagcaagaattattgctaattatttatatgta |
344 |
Q |
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| T |
20407839 |
tgttgattagggaagcaagaattattactcattatttatgtgta |
20407882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 192 - 344
Target Start/End: Original strand, 20442357 - 20442506
Alignment:
| Q |
192 |
atttagagcttggttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagta |
291 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||| ||||| |||| |||||||||||| |||||||||| | ||| ||||||| |||| |
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| T |
20442357 |
atttagagcttggttctttatcaagaattgaagtataaagatagttttgaaaattaatatatattgaatattcttgttgcgattgggtttagatctag-- |
20442454 |
T |
|
| Q |
292 |
atacatccatgttgattagggaagcaagaattattgctaattatttatatgta |
344 |
Q |
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| |||||||||||||||||||||||||||||||| || ||||||||| |||| |
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| T |
20442455 |
-tgcatccatgttgattagggaagcaagaattattactcattatttatgtgta |
20442506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 348
Target Start/End: Complemental strand, 20140299 - 20140164
Alignment:
| Q |
210 |
tatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagtaatacatccatgttgatta |
309 |
Q |
| |
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|||||| ||||||| ||||| ||||||||||||||| ||| ||||| |||| ||| |||| ||||||||||||||| ||||||||| |||||||| |
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| T |
20140299 |
tatcaataattgaactataaagatatttttgcaaattaatgcatattcgatattattgctctgattgtgtttagaccta---atacatccacgttgatta |
20140203 |
T |
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| Q |
310 |
gggaagcaagaattattgctaattatttatatgtatact |
348 |
Q |
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||||| ||||||||||| || ||||||||| | |||||| |
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| T |
20140202 |
gggaaccaagaattattactgattatttatttctatact |
20140164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 20374136 - 20374083
Alignment:
| Q |
54 |
catggcagttgaaagcggggaactaactatttagtgagcaaagtgatacatatca |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
20374136 |
catggcagttgaaagcggggaactcactatttagtgagc-aagtgatacaaatca |
20374083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 20423360 - 20423433
Alignment:
| Q |
262 |
ttcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattattgctaattattta |
338 |
Q |
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||||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||| |
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| T |
20423360 |
ttcttgttccgattgtgtttagacatagta---catccatgttgattggggaagcaagaattattactcattattta |
20423433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 20133024 - 20132961
Alignment:
| Q |
260 |
tattcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattatt |
326 |
Q |
| |
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|||| |||||||| |||||||||||||||||| |||||| || |||||||||||||||||||||| |
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| T |
20133024 |
tattattgttctgattgtgtttagacctagta---catccacgtagattagggaagcaagaattatt |
20132961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 20407543 - 20407596
Alignment:
| Q |
108 |
atatttcttcaaacttatattaattccatttacatataaattttgttgctgata |
161 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||| | || |||||||| |
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| T |
20407543 |
atatatcttcaaacttatattaattccatttacatctaaagtctgctgctgata |
20407596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 20423172 - 20423225
Alignment:
| Q |
108 |
atatttcttcaaacttatattaattccatttacatataaattttgttgctgata |
161 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| |||| | ||||||||||| |
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| T |
20423172 |
atatatcttcaaacttatattaattccattaacatctaaagtctgttgctgata |
20423225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 20423275 - 20423331
Alignment:
| Q |
105 |
atcatatttcttcaaacttatattaattccatttacatataaattttgttgctgata |
161 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| | || | ||||||||||| |
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|
| T |
20423275 |
atcatatatcttcaaacttatagtaattccatttacatctgaagtatgttgctgata |
20423331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 29820662 - 29820633
Alignment:
| Q |
109 |
tatttcttcaaacttatattaattccattt |
138 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29820662 |
tatttcttcaaacttatattaattccattt |
29820633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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