View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_2 (Length: 849)
Name: NF19403_low_2
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 807; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 1 - 832
Target Start/End: Original strand, 22772480 - 22773313
Alignment:
| Q |
1 |
aagaaaacatagatagcatcacaacatccttaattattttagaaataatgctaaatttgataaacaggaccacttgaaccgagaatgaccgatgaacaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22772480 |
aagaaaacatagatagcatcacaacatccttaattattttagaaataatgctaaatttgataaacaggaccacttgaaccgagaatgaccgatgaacaca |
22772579 |
T |
|
| Q |
101 |
gttttgtacggagaaccaacatcggaggcggccgaatgtagattatcttattgttggcaacatctgtcacaccaaacttaactaatgtaccttcattaaa |
200 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22772580 |
gttttgtatggagaaccaacatcggaggcggccgaatgtagattatcttattgttggcaacatctgtcacaccaaacttaactaatgtaccttcattaaa |
22772679 |
T |
|
| Q |
201 |
cttatgtgcctggaaaatattgatccactgcccataaataatgcatgacatgtccttatcgccactgaatttcgaccaacatttccagatataccctagg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22772680 |
cttatgtgcctggaaaatattgatccactgcccataaataatgcatgacatgtccttatcgccactgaatttcgaccaacatttccagatataccctagg |
22772779 |
T |
|
| Q |
301 |
taatcaacaaaagttaact--gtcttcagcaggcaatgaggattgacaaaatccaagccaatacaactcctgcttaggtttaatacattgcattcaaaat |
398 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22772780 |
taatcaacaaaagttaactctgtcttcagcaggcaatgaggattgacaaaatccaagccaatacaactcctgcttaggtttaatacaatgcattcaaaat |
22772879 |
T |
|
| Q |
399 |
cataaaatttggtggatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatataataatcattatattaaaaccttaggc |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22772880 |
cataaaatttggtggatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatataataatcattatattaaaaccttaggc |
22772979 |
T |
|
| Q |
499 |
tatccaggagatagatagtcctaattctacgtgaaacatcgttaaatctgaccaataatcttaaaataataacatgtatcacatcaaagaaaaagtaaat |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22772980 |
tatccaggagatagatagtcctaattctacgtgaaacatcgttaaatctgaccaataatcttaaaataataacatgtatcacatcaaagaaaaagtaaat |
22773079 |
T |
|
| Q |
599 |
ataagaagtaattaccaattcacttaaaagctattatttgcctgtttctatggggtttaattatcacatgtattttttccacactctatttagttttgtt |
698 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22773080 |
ataagaagtaattaccaattcacttaaaagctattatttgcctgtttctatggtgtttaattatcacatgtattttttccaccctctatttagttttgtt |
22773179 |
T |
|
| Q |
699 |
gcatatataggaactatagcattgtaaccatttgaattaattgacacatgtattgttttttcaatattctagctgcaattgcatatggataataaatttc |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22773180 |
gcatatataggaactatagcattgtaaccatttgaattaattgacacatgtattgttttttcaatattctagctgcaattgcatatggataataaatttc |
22773279 |
T |
|
| Q |
799 |
atattttcaagcaatcatgatttggagacttatt |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
22773280 |
atattttcaagcaatcatgatttggagacttatt |
22773313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 43447669 - 43447608
Alignment:
| Q |
410 |
gtggatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatat |
471 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||| ||||||||||||||| | |||||| |
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|
| T |
43447669 |
gtggatacgttactattcatttaagtatcaagagcttaattttgtatgaattacccttatat |
43447608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 9181971 - 9182032
Alignment:
| Q |
410 |
gtggatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatat |
471 |
Q |
| |
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|||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||| |||||| |
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| T |
9181971 |
gtggatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatat |
9182032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 16892459 - 16892406
Alignment:
| Q |
416 |
actttactattcatttttgtattgagagcttgattttgtatgaattatctttat |
469 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||| ||||||| |||| |
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| T |
16892459 |
actttactattcatttttctattgagagtttgattttgtataaattatccttat |
16892406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 471
Target Start/End: Original strand, 43592920 - 43592978
Alignment:
| Q |
413 |
gatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatat |
471 |
Q |
| |
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||||| ||||||||||||| ||||| ||||||| ||||||||||||||||| |||||| |
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| T |
43592920 |
gatacgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatat |
43592978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 47862999 - 47862938
Alignment:
| Q |
410 |
gtggatactttactattcatttttgtattgagagcttgattttgtatgaattatctttatat |
471 |
Q |
| |
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|||||| | ||||||||||||| ||||| ||||||| ||||||||||||||||| |||||| |
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| T |
47862999 |
gtggatccgttactattcatttatgtatcaagagcttaattttgtatgaattatccttatat |
47862938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 52336067 - 52336124
Alignment:
| Q |
410 |
gtggatactttactattcatttttgtattgagagcttgattttgtatgaattatcttt |
467 |
Q |
| |
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|||||||| ||||||||||||| ||||| ||||||| |||||||||||| ||||||| |
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| T |
52336067 |
gtggatacgttactattcatttatgtatcaagagcttaattttgtatgaactatcttt |
52336124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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