View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_21 (Length: 399)
Name: NF19403_low_21
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 25791630 - 25791303
Alignment:
| Q |
1 |
acacttgacattcttaagtattaatagcctccctcttttccttcaactggatctaaagattttgagttgtggaaagttgttaatacataaatatatttat |
100 |
Q |
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| T |
25791630 |
acacttgacattcttaagtattaatagcctccctcttttccttcaactggatctaaagattttgagttgtggaaagttgttaatacataaatatatttat |
25791531 |
T |
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| Q |
101 |
agtaaactttcatgtattaaaatattcaccccaatcattaaaaaaggagtaatgatacataaaaaactttgttataatattcacaaggtgttctaatact |
200 |
Q |
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| T |
25791530 |
agtaaactttcatgtattaaaatattcaccccaatcattaaaaaaagagtaatgatacataaaaaactttgttataatattcacaaggtgttctaatact |
25791431 |
T |
|
| Q |
201 |
aatgatttaaaaactttgttataatgtaacacagaaaaagattgtcataaaaataacaataatgctaaatacatcaaatattcttatcacaaatgtatca |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25791430 |
aatgatttaaaaaatttgttataatgtaacacagaaaaagattgtcataaaaataacaataatgctaaatacatcaaatattcttatcacaaatgtatca |
25791331 |
T |
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| Q |
301 |
cgattgatgtggcatgggcacctgtatc |
328 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
25791330 |
cgattgatgtggcatgggcacttgtatc |
25791303 |
T |
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