View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_24 (Length: 360)
Name: NF19403_low_24
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 21380043 - 21379688
Alignment:
| Q |
1 |
gataattggggcccacacccttggcgcatgttgaaatgttcggttgatagttgtatactctaaacataaagtcattgtatatgaccgatatatacttcac |
100 |
Q |
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| T |
21380043 |
gataattggggcccacacccttggcgcatgttgaaatgttgggttgatagttgtatattctaaacataaagtcattgtatctgaccg----atacttcac |
21379948 |
T |
|
| Q |
101 |
aaatacttttagatacatatccgtaaagtattggaatta---nnnnnnnnnnnnnaaaaagtattttatcgaa-----------tatttgacggatacgc |
186 |
Q |
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| T |
21379947 |
agatacttttagatacatatctataaagtattggaattattttttttttatttttaaaaagtattttattgaatacttatagaatatttgacggatacgt |
21379848 |
T |
|
| Q |
187 |
agattatattaagatatttcacatttctgtatcacgtacacgtgctacatagttcaatagtaattgtttgattcacagcattattcataacataatcaaa |
286 |
Q |
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|||| || ||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21379847 |
agatactaataagatagttcacatttatgtatcaagtacacgtgctacatagttaaatagtaattgtttgattcacaacattattcataacataatcaaa |
21379748 |
T |
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| Q |
287 |
tttaaacccataaggaagacacctaaatagagtatgtcacgttacacaatatcatatttt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379747 |
tttaaacccataaggaagacacctaaatagagtatgtcacgttacacaatatcatatttt |
21379688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48636535 - 48636581
Alignment:
| Q |
1 |
gataattggggcccacacccttggcgcatgttgaaatgttcggttga |
47 |
Q |
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|||||||||||||| | |||||||||||||||||| |||| |||||| |
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| T |
48636535 |
gataattggggccctcgcccttggcgcatgttgaagtgttgggttga |
48636581 |
T |
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