View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19403_low_34 (Length: 250)
Name: NF19403_low_34
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 49987715 - 49987478
Alignment:
| Q |
1 |
catttaaagaaaattaggaaccctgagcaacaacatcaccatttaccacaacaccggcagatccatctgttttataaacaaaaagaaagacaagataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49987715 |
catttaaagaaaattaggaaccctgagcaacaacatcaccatttaccacaacaccggcagatccatctgttttataaacaaaaagaaagacaagataaaa |
49987616 |
T |
|
| Q |
101 |
ctttagacaaatgaaaatgttcttataccaacttcatgaatgttgaatttattttaccctccagagtagacaattgaaatgaatgtgagaaaacacagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49987615 |
ctttagacaaatgaaaatgttcttataccaacttcatgaatgttgaatttatttcaccctctagagtagacaattgacatgaatgtgagaaaacacagca |
49987516 |
T |
|
| Q |
201 |
ttggtgattactttatctatagacccgtcagtgagtat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49987515 |
ttggtgattactttatctatagacccgtcagtgagtat |
49987478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42302408 - 42302521
Alignment:
| Q |
1 |
catttaaagaaaattaggaaccctgagcaacaacatcaccatttaccacaacaccggcagatccatctgttttataaacaaaaagaaagacaagataaaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| || | ||||||||| ||| ||| ||| |||| ||||||| ||| |
|
|
| T |
42302408 |
catttaaagaaaattgggaaccctgagcaacaacatcgccattaaccacaacactggaacatccatctg--ttacaaatgaaatgaaaaacaagat-aaa |
42302504 |
T |
|
| Q |
101 |
ctttagacaaatgaaaa |
117 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42302505 |
ttttagacaaatgaaaa |
42302521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University