View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_36 (Length: 247)
Name: NF19403_low_36
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 1588368 - 1588604
Alignment:
| Q |
10 |
aatattcaaagatattttaaaattgtattatatcattaaatgtagtcactatagnnnnnnngatcattaaatgcagtcaaatccttttataattaatgag |
109 |
Q |
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| T |
1588368 |
aatattcaaagatattttaaaattgtattatatcattaaatgtagtcactatagaaaaaaagatcattaaatgcagtcaaatccttttataactaatgag |
1588467 |
T |
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| Q |
110 |
tcaaaaattccaatattgaaattttccgtaacatggagagactaaaattggaagatagatcctttgtgacatgtttggacgtctcattgtgcaaaataag |
209 |
Q |
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| T |
1588468 |
tcaaaa-ttccaatattgaaattttccgtaacatggagagactaaaattggaagatagatcctttgtgacatgtttggacgtctcattgtgcaaaataag |
1588566 |
T |
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| Q |
210 |
ttattttccgtaataaaaggtttgaataattgattcct |
247 |
Q |
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| T |
1588567 |
ttattttccgtaataaaaggtttgaataattgattcct |
1588604 |
T |
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