View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_41 (Length: 237)
Name: NF19403_low_41
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 742238 - 742021
Alignment:
| Q |
4 |
cgaagaatatggaaaagcacaagcatttttcctccctattttttatgtgattatacgtgtatgtctgtctgtctgtcatgtat-tatatatacttacaat |
102 |
Q |
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| T |
742238 |
cgaaaaatatggaaaagcacaagcatttttcctccctattttttatgtgattatacgtgtatgtctgtca-tgtattatatatatatatatacttacaat |
742140 |
T |
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| Q |
103 |
agttgagaaataatcaccgggaaggtggaaaagaaatacaactaacaacaacaaagcaaagagttttaaatttaattattaattaataaaagtaaaatgg |
202 |
Q |
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| T |
742139 |
agttgagaaataatcaccgggaaggtggaaaagaaatacaactaacaacaacaaagcaaagagttttaaatttaattattaattaataaaagtaaaatgg |
742040 |
T |
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| Q |
203 |
gaaacaaaattgttgcatt |
221 |
Q |
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| T |
742039 |
gaaacaaaattgttgcatt |
742021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 796648 - 796790
Alignment:
| Q |
77 |
tgtcatgtattatatatacttacaatagtt--gagaaataatcaccgggaaggtggaaaagaaatacaactaacaacaacaaagcaaagagttttaaatt |
174 |
Q |
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| T |
796648 |
tgtcatgtattatatatacttacaatagatcacacaaataattaccgggaaggaggaagattaatacaactaacaacaacaaagcaaagagttttaaatt |
796747 |
T |
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| Q |
175 |
taattattaattaataaaagtaaaatgggaaacaaaattgttgcatt |
221 |
Q |
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| T |
796748 |
ta---attaattaat-aaagtaaaatgggaaacaaaattgttgcatt |
796790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 3983375 - 3983463
Alignment:
| Q |
80 |
catgtattatatatacttacaatagttgagaaataatcaccgggaaggtggaaaagaaatacaactaacaacaacaaagcaaagagttt |
168 |
Q |
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| T |
3983375 |
catgtattatatatacttacaatagttcacaaataaagacggtgaaggaggaaaataaatacaactaacaacaacaaagcaaagagttt |
3983463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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