View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_low_44 (Length: 223)
Name: NF19403_low_44
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 26017327 - 26017198
Alignment:
| Q |
28 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttgcacatgcatccattttgtaaatcccattaaccataaattcaataagaccttt |
127 |
Q |
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| T |
26017327 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttacacatgtatccattttgtaaatcccattaaccataaatttaataagaccttt |
26017228 |
T |
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| Q |
128 |
ccaaatttgtttaataaatctatatagtat |
157 |
Q |
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| T |
26017227 |
ccaaatttgtttaataaatctatatagtat |
26017198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 26017180 - 26017149
Alignment:
| Q |
173 |
gatgaacaaatccatgcaacccatgaagttac |
204 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26017180 |
gatgaacaaatccatgcaacccatgaagttac |
26017149 |
T |
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