View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19403_low_5 (Length: 738)

Name: NF19403_low_5
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19403_low_5
NF19403_low_5
[»] chr1 (2 HSPs)
chr1 (13-724)||(36979479-36980182)
chr1 (404-469)||(28108178-28108244)
[»] chr7 (3 HSPs)
chr7 (376-470)||(2729785-2729879)
chr7 (391-441)||(5897602-5897652)
chr7 (412-466)||(28443765-28443819)
[»] chr3 (2 HSPs)
chr3 (380-440)||(39028189-39028249)
chr3 (414-452)||(51381055-51381093)
[»] chr6 (4 HSPs)
chr6 (380-469)||(33900099-33900188)
chr6 (380-455)||(27177029-27177104)
chr6 (380-452)||(10498119-10498191)
chr6 (412-468)||(33629460-33629516)
[»] chr2 (8 HSPs)
chr2 (392-469)||(29699507-29699584)
chr2 (376-470)||(27249739-27249833)
chr2 (412-458)||(5357560-5357606)
chr2 (405-466)||(3848151-3848212)
chr2 (376-441)||(29923870-29923935)
chr2 (376-452)||(11915387-11915463)
chr2 (414-470)||(25271846-25271902)
chr2 (376-435)||(12037358-12037417)
[»] chr8 (3 HSPs)
chr8 (376-440)||(31645172-31645236)
chr8 (412-470)||(5920766-5920824)
chr8 (376-452)||(42456844-42456920)
[»] chr4 (5 HSPs)
chr4 (376-439)||(45073262-45073325)
chr4 (376-469)||(9672177-9672270)
chr4 (380-469)||(21512084-21512173)
chr4 (376-470)||(24699347-24699441)
chr4 (416-469)||(12868532-12868585)
[»] chr5 (1 HSPs)
chr5 (380-452)||(9379273-9379345)


Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 13 - 724
Target Start/End: Complemental strand, 36980182 - 36979479
Alignment:
Q  13 ataatacttcaggttatatcaattatataaatattttttcgtgcatgtctctaaaggcatgtatcatggcttttcataaaatttgttaactggacttaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  36980182 ataatacttcaggttatatcaattatataaatattttttcgtgcatgtctctaaaggcatgtatcatggcttttcataa--tttgttaactggacttaaa 36980085  T
Q  113 tttcttattgtaaggacttgtattatggttgatctttctatctggatcccactttgcatataaatgatgtaactatcatgttgtcgtaacttttttgtgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36980084 tttcttattgtaaggacttgtattatggttgatctttctatctggatcccactttgcatataaatgatgtaactatcatgttgtcgtaacatttttgtgt 36979985  T
Q  213 ttgtaattgttggctggtttatatgagtgaaacactttaatgtaaggatagagtttattttgacattgtaattgtttcataagtattctctcatttgtgg 312  Q
    ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979984 ttgt------tggctggtttatatgagtgaaacactttaatgtaaggatagagtttattttgacattgtaattgtttcataagtattctctcatttgtgg 36979891  T
Q  313 ataccatagcatgcttttatctttggattgaccatttcaaatttaaaagtgacatgcaattttatggattttaatcggcggcaattaattgccgatgatc 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  36979890 ataccatagcatgcttttatctttggattgaccatttcaaatttaaaagtgacatgcaattttatggattttaatcggcggcaattaattgccgattaac 36979791  T
Q  413 atttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttcacaggccttatcatcggaggctatgtttaaaattctcatatgg 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||| |||||||    
T  36979790 atttacgtctttttctggtgtgtttcagctttgttagaagcgtgaaaaacaattttcataggccttgtcatgggaggctatgtttaaaattcccatatgg 36979691  T
Q  513 gaccaatgtagttgcaaatgatatgaacttgcccaaatgctttgctcctttgtcatgtgcaactgcctatatgtctttgtttgaactgctaaaagtaaca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979690 gaccaatgtagttgcaaatgatatgaacttgcccaaatgctttgctcctttgtcatgtgcaactgcctatatgtctttgtttgaactgctaaaagtaaca 36979591  T
Q  613 ttttctatcaaagcttttccttttcctttttacatatttgataatcattctctttccttgtcttttggtatattgggggtggggatagagatgatgttga 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979590 ttttctatcaaagcttttccttttcctttttacatatttgataatcattctctttccttgtcttttggtatattgggggtggggatagagatgatgttga 36979491  T
Q  713 agatttcttttt 724  Q
    ||||||||||||    
T  36979490 agatttcttttt 36979479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 469
Target Start/End: Original strand, 28108178 - 28108244
Alignment:
Q  404 ccgatgatcatttacgtc-tttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 469  Q
    ||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||| ||||||||||    
T  28108178 ccgatgaacatttacgtcttttttctggtttgtttcagccttgttagaagtgtgaacaacaattttc 28108244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 2729879 - 2729785
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 470  Q
    |||||||||||  || |||| |||| ||||||||  |||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||    
T  2729879 atggattttaactggtggcagttaactgccgatggacatttacgtctttttctgttgtgtttcagccttgttagaagtgtgaatatcaattttca 2729785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 5897652 - 5897602
Alignment:
Q  391 cggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagc 441  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  5897652 cggcaattaattgctgatgtgcatttacgtctttttctggtgtgtttcagc 5897602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 466
Target Start/End: Original strand, 28443765 - 28443819
Alignment:
Q  412 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaatt 466  Q
    ||||||||||||||||| |||||||||||| ||||| |||| ||||| |||||||    
T  28443765 catttacgtctttttctagtgtgtttcagccttgtttgaagtgtgaacaacaatt 28443819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 39028189 - 39028249
Alignment:
Q  380 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcag 440  Q
    ||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  39028189 attttaaccggcggcagttaactgccgatgaacatttacgtctttttctggtgtgtttcag 39028249  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 414 - 452
Target Start/End: Original strand, 51381055 - 51381093
Alignment:
Q  414 tttacgtctttttctggtgtgtttcagctttgttagaag 452  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  51381055 tttacgtctttttctggtgtgtttcagccttgtttgaag 51381093  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 33900188 - 33900099
Alignment:
Q  380 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 469  Q
    ||||||| |||||||| |||| | || |||| ||||||||||||||||||||||||||| || ||||| |||| || || ||||||||||    
T  33900188 attttaaccggcggcagttaactaccaatgagcatttacgtctttttctggtgtgtttcggcattgtttgaagtgtaaacaacaattttc 33900099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 27177029 - 27177104
Alignment:
Q  380 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgt 455  Q
    |||||||||||||||| |||| || |||||| |||||||||||||||||  |||||||||   |||||||||||||    
T  27177029 attttaatcggcggcagttaactgtcgatgaacatttacgtctttttctaatgtgtttcaatcttgttagaagcgt 27177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 452
Target Start/End: Complemental strand, 10498191 - 10498119
Alignment:
Q  380 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 452  Q
    ||||||| ||| |||| |||| || |||||| |||||||||||||||||| ||||||||| |||| |||||||    
T  10498191 attttaaacggtggcagttaactgtcgatgaacatttacgtctttttctgatgtgtttcaactttattagaag 10498119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 33629460 - 33629516
Alignment:
Q  412 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaatttt 468  Q
    |||||||||||||||||| ||||||||||| |||||| ||| | ||| |||||||||    
T  33629460 catttacgtctttttctgatgtgtttcagccttgttaaaagtgcgaacaacaatttt 33629516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 29699584 - 29699507
Alignment:
Q  392 ggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 469  Q
    |||| |||| ||||||||  |||||||||||||||||||||||||||||| |||||||||   |||||| ||||||||    
T  29699584 ggcagttaactgccgatggacatttacgtctttttctggtgtgtttcagccttgttagaaatatgaataccaattttc 29699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 27249833 - 27249739
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 470  Q
    |||||||||||  ||||||| |||| ||||||||  ||||||| |||||||| ||||||||||||| ||||| |||| ||  | |||||||||||    
T  27249833 atggattttaacaggcggcagttaactgccgatggacatttacatctttttccggtgtgtttcagccttgtttgaagtgtatacaacaattttca 27249739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 5357606 - 5357560
Alignment:
Q  412 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaa 458  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||||    
T  5357606 catttacgtctttttctagtgtgtttcagccttgttagaagtgtgaa 5357560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 466
Target Start/End: Original strand, 3848151 - 3848212
Alignment:
Q  405 cgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaatt 466  Q
    |||||| |||||| ||||||||||| ||||||||||||||  || ||| |||||||||||||    
T  3848151 cgatgaacatttatgtctttttctgatgtgtttcagctttcataaaagtgtgaataacaatt 3848212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 29923935 - 29923870
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagc 441  Q
    ||||||||||| |||||||| |||| || |||| | |||||| ||||||||||| |||||||||||    
T  29923935 atggattttaaccggcggcagttaactgtcgataaacatttatgtctttttctgttgtgtttcagc 29923870  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 11915463 - 11915387
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 452  Q
    ||||||||||| |||| | | |||| || |||||| ||||||| | |||||||||||||||||||  ||||||||||    
T  11915463 atggattttaaccggcagtagttaactgtcgatgaacatttacatttttttctggtgtgtttcagtcttgttagaag 11915387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 25271846 - 25271902
Alignment:
Q  414 tttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 470  Q
    |||||||||||||||| ||||||||||| ||||| |||| || || |||||||||||    
T  25271846 tttacgtctttttctgatgtgtttcagccttgtttgaagtgtaaacaacaattttca 25271902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 12037358 - 12037417
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgt 435  Q
    ||||||||||| || ||| | |||| |||| |||| ||||||||||||||||||||||||    
T  12037358 atggattttaaccgacggtagttaactgccaatgaacatttacgtctttttctggtgtgt 12037417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 31645172 - 31645236
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcag 440  Q
    ||||||||||| || ||||| |||| |||||||| |||||||| || ||||||||||||||||||    
T  31645172 atggattttaaccgacggcagttaactgccgatggtcatttacttcattttctggtgtgtttcag 31645236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 5920824 - 5920766
Alignment:
Q  412 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 470  Q
    ||||||||| |||||||| ||||||| ||| |||||||||| ||||| |||||||||||    
T  5920824 catttacgtatttttctgctgtgttttagccttgttagaagtgtgaacaacaattttca 5920766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 42456920 - 42456844
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 452  Q
    ||||||||||| || ||| | ||||||| |||||  || ||||||||||||||| ||| ||||||| ||||||||||    
T  42456920 atggattttaaccgacggtagttaattgtcgatggacaattacgtctttttctgatgtatttcagccttgttagaag 42456844  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 45073262 - 45073325
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttca 439  Q
    ||||||||||| |||||||| |||| ||||||||  ||||||| ||||||||| ||||||||||    
T  45073262 atggattttaaccggcggcagttaactgccgatggacatttacatctttttctagtgtgtttca 45073325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 469
Target Start/End: Original strand, 9672177 - 9672270
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 469  Q
    ||||||||||| || || || |||| | ||||||  ||||| |||||||||||| ||||||||||| |||||||||  ||||| | ||||||||    
T  9672177 atggattttaaccgacgacagttaactaccgatgggcattttcgtctttttctgatgtgtttcagcattgttagaactgtgaacatcaattttc 9672270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 469
Target Start/End: Original strand, 21512084 - 21512173
Alignment:
Q  380 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 469  Q
    ||||||| |||| ||| |||| ||| ||||  |||||||||||||||||||||||||||| | |||||  ||| || || ||||||||||    
T  21512084 attttaaccggctgcagttaactgctgatggacatttacgtctttttctggtgtgtttcatccttgtttaaagtgtcaacaacaattttc 21512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 470
Target Start/End: Complemental strand, 24699441 - 24699347
Alignment:
Q  376 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 470  Q
    |||||||||||  ||||||| |||| || |||||  |||||||||||||||||||| ||||| |||  |||| |||  || || |||||||||||    
T  24699441 atggattttaactggcggcagttaactggcgatggacatttacgtctttttctggtatgttttagccctgtttgaattgtaaacaacaattttca 24699347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 469
Target Start/End: Original strand, 12868532 - 12868585
Alignment:
Q  416 tacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 469  Q
    ||||| |||| ||||||||||| ||||||||||||||  |||| ||||||||||    
T  12868532 tacgtgttttactggtgtgttttagctttgttagaagtatgaacaacaattttc 12868585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 9379273 - 9379345
Alignment:
Q  380 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 452  Q
    ||||||| |||||||| ||||||  ||||||  ||||| ||||||||||||||| ||||||| || |||||||    
T  9379273 attttaaccggcggcagttaattatcgatgagaatttatgtctttttctggtgtatttcagccttcttagaag 9379345  T

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