View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19403_low_8 (Length: 592)

Name: NF19403_low_8
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19403_low_8
NF19403_low_8
[»] chr8 (2 HSPs)
chr8 (18-585)||(595442-596009)
chr8 (249-334)||(23962328-23962413)
[»] chr4 (1 HSPs)
chr4 (18-224)||(17373398-17373604)
[»] chr5 (6 HSPs)
chr5 (18-112)||(33005960-33006051)
chr5 (18-117)||(7632832-7632928)
chr5 (384-475)||(4590038-4590129)
chr5 (162-221)||(33006147-33006205)
chr5 (387-478)||(4603679-4603770)
chr5 (162-224)||(7633021-7633083)
[»] chr2 (3 HSPs)
chr2 (18-88)||(15290410-15290482)
chr2 (19-84)||(26587991-26588056)
chr2 (162-220)||(15290245-15290303)


Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 596009 - 595442
Alignment:
Q  18 ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  596009 ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt 595910  T
Q  118 nnnnnnnncctccatttgtccgcttgaaatgcctccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt 217  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595909 aaaaaaaacctccatttgtccgcttgaaatgcctccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt 595810  T
Q  218 gtttaccnnnnnnntgtaaagagcgaaaaggaagatttgattgatattgaacaccaaaagctgctacctttgaagaaatttccagcactctgcgaaaagg 317  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595809 gtttaccaaaaaaatgtaaagagcgaaaaggaagatttgattgatattgaacaccaaaagctgctacctttgaagaaatttccagcactctgcgaaaagg 595710  T
Q  318 aaatggcatacctttaattcaattgaatattcataatcacattatcaatagacgtagaaactaaagtagacgactcttgaattctcactgctctgtcaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595709 aaatggcatacctttaattcaattgaatattcataatcacattatcaatagacgtagaaactaaagtagacgactcttgaattctcactgctctgtcaac 595610  T
Q  418 aaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaaatagtactaaaattagtttgagcaataacaaagcctatgtat 517  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  595609 aaactaaaatcaagcaaagcaatcaagacagtaatccatttttgctatgattggtaaaatagtactaaaattagtttgaacaataacaaagcctatgtat 595510  T
Q  518 tattccccttgtcctgttatgtactaaatttgcatccttcttttttatttgtttctgtttctctgctc 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595509 tattccccttgtcctgttatgtactaaatttgcatccttcttttttatttgtttctgtttctctgctc 595442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 23962328 - 23962413
Alignment:
Q  249 aagatttgattgatattgaacaccaaaagctgctacctttgaagaaatttccagcactctgcgaaaaggaaatggcatacctttaa 334  Q
    |||| ||||||||||||||||| |||||||| ||||||| |||||| |||||| |||    |||||||  |||| |||||||||||    
T  23962328 aagacttgattgatattgaacatcaaaagctactaccttcgaagaagtttccaacaccgcacgaaaagacaatgacatacctttaa 23962413  T

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Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 17373604 - 17373398
Alignment:
Q  18 ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt 117  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17373604 ttttcaacgagtttatttaaattattcatcatataataactaccatgaatatgaattttacaatcatttgttgctataagcatccatttgaatatcgatt 17373505  T
Q  118 nnnnnnnncctccatttgtccgcttgaaatgcctccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt 217  Q
            ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17373504 aaaaaaaacctccatttgtctacttgaaatgcttccatttagctttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagattt 17373405  T
Q  218 gtttacc 224  Q
    |||||||    
T  17373404 gtttacc 17373398  T

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Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 33005960 - 33006051
Alignment:
Q  18 ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatat 112  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  33005960 ttttcaacaagtttattttaattattcatcatataataactaccatga---tgaattttacaatcatttgttgttataagcatccatttgaatat 33006051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 7632832 - 7632928
Alignment:
Q  18 ttttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcatttgttgttataagcatccatttgaatatcgatt 117  Q
    |||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||   |||| ||||||| ||||||||| |||||||    
T  7632832 ttttcaacaagtttatttcaattattcatcataaaataaccaccatgaatatgaattttacaatcat---ttgtcataagcaaccatttgaaaatcgatt 7632928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 4590129 - 4590038
Alignment:
Q  384 tagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaa 475  Q
    ||||||||||| |||||||| ||| |||||||||||||||||| |||| |||||||||| ||||| |||  |||| ||||||||||||||||    
T  4590129 tagacgactctcgaattctccctggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaa 4590038  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 33006147 - 33006205
Alignment:
Q  162 ttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagatttgttt 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  33006147 ttaatatcataaagaacgagatctttttctttgactaatcataaa-aatgagatttgttt 33006205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 4603770 - 4603679
Alignment:
Q  387 acgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaaata 478  Q
    |||| ||| ||||||||||||  ||||| ||||| ||||| |||| |||||||||| || ||||||  | || |||||||||||||||||||    
T  4603770 acgattctcgaattctcactgacctgtcgacaaattaaaaacaagtaaagcattcaggatagtaatttaattctgctatgattggtaaaata 4603679  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 7633021 - 7633083
Alignment:
Q  162 ttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagatttgtttacc 224  Q
    ||||||||||||||||| |||| ||||  ||| ||||||||||||| ||| ||||||||||||    
T  7633021 ttaatatcataaagaacgagattttttatttttactaatcataaagtatgggatttgtttacc 7633083  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 15290482 - 15290410
Alignment:
Q  18 ttttcaacaagtttatttaaattatttatcatataataa--ctaccatgaatatgaattttacaatcatttgt 88  Q
    |||||||||||||||||| ||||||| |||||| || ||  ||||||||||||||||||||||||||||||||    
T  15290482 ttttcaacaagtttatttcaattattcatcataaaaaaaaactaccatgaatatgaattttacaatcatttgt 15290410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 26587991 - 26588056
Alignment:
Q  19 tttcaacaagtttatttaaattatttatcatataataactaccatgaatatgaattttacaatcat 84  Q
    ||||||||||||||| | ||||||| || | |||||||||||  || |||||||||||||||||||    
T  26587991 tttcaacaagtttatgtcaattattcatgaaataataactactttgtatatgaattttacaatcat 26588056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 15290303 - 15290245
Alignment:
Q  162 ttaatatcataaagaacaagatctttttctttgactaatcataaagaatgagatttgtt 220  Q
    ||||||||||||||||| ||   ||||| ||| |||||| |||||||||||||||||||    
T  15290303 ttaatatcataaagaacgagtatttttttttttactaatgataaagaatgagatttgtt 15290245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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