View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19404_low_2 (Length: 494)

Name: NF19404_low_2
Description: NF19404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19404_low_2
NF19404_low_2
[»] chr6 (10 HSPs)
chr6 (12-478)||(9179969-9180435)
chr6 (131-478)||(9145997-9146344)
chr6 (12-127)||(9147063-9147178)
chr6 (61-105)||(31117172-31117216)
chr6 (233-370)||(31117674-31117811)
chr6 (261-365)||(6613013-6613117)
chr6 (61-105)||(31116816-31116860)
chr6 (440-475)||(6613186-6613221)
chr6 (261-364)||(6631693-6631796)
chr6 (61-104)||(31117536-31117579)
[»] chr4 (2 HSPs)
chr4 (202-326)||(17374052-17374176)
chr4 (63-108)||(7110483-7110528)
[»] chr8 (1 HSPs)
chr8 (14-95)||(596738-596819)
[»] chr7 (1 HSPs)
chr7 (446-478)||(10973385-10973417)


Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 478
Target Start/End: Original strand, 9179969 - 9180435
Alignment:
Q  12 aatatcacaaaatgggaaataattcaaatgtttttgctcaaaattaagtcaatttattcttgctgactaaaatgagaaaagtcaatgaacaaatccctct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9179969 aatatcacaaaatgggaaataattcaaatgtttttgctcaaaattaagtcaatttattcttgctgactaaaatgagaaaagtcaatgaacaaatccctct 9180068  T
Q  112 tttcatgcaacgtgtattaccctttgaatttgatgagaacaattaagctaatttcataattaactaattatgaggtcaacaaggtctttaaatttgcaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9180069 tttcatgcaacgtgtattaccctttgaatttgatgagaacaattaagctaatttcataattgactaattatgaggtcaacaaggtctttaaatttgcaaa 9180168  T
Q  212 taatttcctttgttgaatgttctataaattaagattgttgtacggttaataggcattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaat 311  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9180169 taatttccattgttgaatgttctataaattaaaattgttgtacggtttataggcattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaaa 9180268  T
Q  312 tttcgattctcctaactatactacttgcatgtaaggttagagatactatagcttttggttttgggccttttggtagggtaacagttactattatcaatga 411  Q
         |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9180269 aaattattctcctaactatactacttgcatgtaaggttagagatactaccgcttttggttttgggccttttggtagggtaacagttactattatcaatga 9180368  T
Q  412 agtaatcgccccggatctcaaaactattactgttcattgcaaatctcaagatgacgatcttggattt 478  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9180369 agtaatcgccccggatctcaaaaccattactgttcattgcaaatctcaagatgacgatcttggattt 9180435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 131 - 478
Target Start/End: Complemental strand, 9146344 - 9145997
Alignment:
Q  131 ccctttgaatttgatgagaacaattaagctaatttcataattaactaattatgaggtcaacaaggtctttaaatttgcaaataatttcctttgttgaatg 230  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9146344 ccctttgaatttgatgagaacaattaagctaatttcataattgactaattatgaggtcaacaaggtctttaaatttgcaaataatttcctttgttgaatg 9146245  T
Q  231 ttctataaattaagattgttgtacggttaataggcattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaattttcgattctcctaactat 330  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9146244 ttctataaattaagattgttgtacggtttatagacattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaattttcgattctcctaactat 9146145  T
Q  331 actacttgcatgtaaggttagagatactatagcttttggttttgggccttttggtagggtaacagttactattatcaatgaagtaatcgccccggatctc 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9146144 actacttgcatgtaaggttagagatactatagcttttggttttgggccttttggtagggtaacagttactattatcaatgaagtaatcgccccggatctc 9146045  T
Q  431 aaaactattactgttcattgcaaatctcaagatgacgatcttggattt 478  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9146044 aaaaccattactgttcattgcaaatctcaagatgacgatcttggattt 9145997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 9147178 - 9147063
Alignment:
Q  12 aatatcacaaaatgggaaataattcaaatgtttttgctcaaaattaagtcaatttattcttgctgactaaaatgagaaaagtcaatgaacaaatccctct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9147178 aatatcacaaaatgggaaataattcaaatgtttttgctcaaaatgaagtcaatttattcttgctgactaaaatgagaaaagtcaatgaacaaatccctct 9147079  T
Q  112 tttcatgcaacgtgta 127  Q
    ||||||||||||||||    
T  9147078 tttcatgcaacgtgta 9147063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 31117172 - 31117216
Alignment:
Q  61 caatttattcttgctgactaaaatgagaaaagtcaatgaacaaat 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  31117172 caatttattcttgctgactaaaatgacaaaagtcaatgaacaaat 31117216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 370
Target Start/End: Original strand, 31117674 - 31117811
Alignment:
Q  233 ctataaattaagattgttgtacggttaataggcattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaattttcgattctcctaactatac 332  Q
    |||||||||||||||| |||| |  |  ||||||||||||||||||||||||||| || || | |||  ||||||||||  || || |||||||  || |    
T  31117674 ctataaattaagattgatgtatgtcttgtaggcattgtgcatacaacaatggcaattccaagtgcaatcaccttaaaatcatcaatactcctaatcatgc 31117773  T
Q  333 tacttgcatgtaaggttagagatactatagcttttggt 370  Q
    ||||||||| | ||| |||||| ||||| ||| |||||    
T  31117774 tacttgcatttgaggctagagagactatcgctattggt 31117811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 365
Target Start/End: Original strand, 6613013 - 6613117
Alignment:
Q  261 taggcattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaattttcgattctcctaactatactacttgcatgtaaggttagagatactat 360  Q
    ||||||||| | ||||||||||| |||||| || | |||  | |||||||| ||| || |||||||||| ||||||||||| | |||  ||||| |||||    
T  6613013 taggcattgagtatacaacaatgacaactccaagtacaattatcttaaaatgttcaatactcctaactacactacttgcatttgaggccagagagactat 6613112  T
Q  361 agctt 365  Q
    |||||    
T  6613113 agctt 6613117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 31116816 - 31116860
Alignment:
Q  61 caatttattcttgctgactaaaatgagaaaagtcaatgaacaaat 105  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||    
T  31116816 caattaattcttgctgactacaatgacaaaagtcaatgaacaaat 31116860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 475
Target Start/End: Original strand, 6613186 - 6613221
Alignment:
Q  440 actgttcattgcaaatctcaagatgacgatcttgga 475  Q
    |||||||||||||||||| |||||||||||||||||    
T  6613186 actgttcattgcaaatctaaagatgacgatcttgga 6613221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 364
Target Start/End: Original strand, 6631693 - 6631796
Alignment:
Q  261 taggcattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaattttcgattctcctaactatactacttgcatgtaaggttagagatactat 360  Q
    ||||||||| ||||||||||||| ||  || |||| |||  | |||||||||||| || ||| |||  ||||||||||||| | ||| ||| ||||||||    
T  6631693 taggcattgcgcatacaacaatgacagttccaaattcaattagcttaaaattttcaatactcataatcatactacttgcatttgaggctagtgatactat 6631792  T
Q  361 agct 364  Q
    ||||    
T  6631793 agct 6631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 31117536 - 31117579
Alignment:
Q  61 caatttattcttgctgactaaaatgagaaaagtcaatgaacaaa 104  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||    
T  31117536 caatttattcttgctgactaaaatgacaaaaatcattgaacaaa 31117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 17374176 - 17374052
Alignment:
Q  202 aatttgcaaataatttccttt-gttgaatgttctataaattaagattgttgtacggt-taataggcattgtgcatacaacaatggcaactcaaaatccaa 299  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||||| |||  ||| |  | ||||| ||||||||||||||||||  || || | |||    
T  17374176 aatttgcaaatcatttccttttgtttaatgttctataaattaagattgatgt--ggtcttgttggcatggtgcatacaacaatggcagttccaagtacaa 17374079  T
Q  300 cgaccttaaaattttcgattctcctaa 326  Q
      ||||| ||||||||||| |||||||    
T  17374078 ttaccttcaaattttcgatactcctaa 17374052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 7110528 - 7110483
Alignment:
Q  63 atttattcttgctgactaaaatgagaaaagtcaatgaacaaatccc 108  Q
    |||||||||||||||| ||||||| || | ||||||||||||||||    
T  7110528 atttattcttgctgaccaaaatgaaaatattcaatgaacaaatccc 7110483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 596819 - 596738
Alignment:
Q  14 tatcacaaaatgggaaataattcaaatgtttttgctcaaaattaagtcaatttattcttgctgactaaaatgagaaaagtca 95  Q
    |||| ||||||||||||||| ||||||   |||| ||  ||||||| |||||||||||||  ||| ||||||||||||||||    
T  596819 tatcgcaaaatgggaaataaatcaaattagtttgttcttaattaagccaatttattcttggggaccaaaatgagaaaagtca 596738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 10973385 - 10973417
Alignment:
Q  446 cattgcaaatctcaagatgacgatcttggattt 478  Q
    |||||||||||| ||||||||||||||||||||    
T  10973385 cattgcaaatctaaagatgacgatcttggattt 10973417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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