View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19404_low_3 (Length: 462)

Name: NF19404_low_3
Description: NF19404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19404_low_3
NF19404_low_3
[»] chr6 (1 HSPs)
chr6 (192-295)||(18903634-18903738)
[»] chr3 (1 HSPs)
chr3 (17-74)||(39924289-39924346)
[»] chr2 (1 HSPs)
chr2 (358-426)||(1042946-1043010)
[»] chr8 (1 HSPs)
chr8 (228-296)||(39657140-39657208)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 18903634 - 18903738
Alignment:
Q  192 ttttgacacgagtcattaattttcttgaaaatattggtttctcataagt-tttgttattctcccatcttgctaacaaaaattccttaaatctctccatga 290  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||| |||||| ||||||||| |||||||| |||||    
T  18903634 ttttgacatgagtaattaattttcttgaaaatattggtttctcatacgtgtttgttattctcctatctggctaaccaaaattcctaaaatctcttcatga 18903733  T
Q  291 ctcat 295  Q
    |||||    
T  18903734 ctcat 18903738  T

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Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 39924346 - 39924289
Alignment:
Q  17 acttctttggggtgtgatgttgtcattgtaaatccattttatcctatgggactttttg 74  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39924346 acttctctggggtgtgatgttgtcattgtaaatccattttatcctatgggactttttg 39924289  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 1042946 - 1043010
Alignment:
Q  358 ttaattaatttagaaactgtcatgttttaatagtgtatttattcaatactttgagcaatagaaaaggaa 426  Q
    |||||||||| ||||||||||||||||||   ||||||||||||| | |||||||||||||||||||||    
T  1042946 ttaattaatt-agaaactgtcatgtttta---gtgtatttattcattgctttgagcaatagaaaaggaa 1043010  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 39657208 - 39657140
Alignment:
Q  228 gtttctcataagttttgttattctcccatcttgctaacaaaaattccttaaatctctccatgactcatt 296  Q
    |||||| ||| || ||||||||| || |||||||| ||  |||||||| ||||||||||||||||||||    
T  39657208 gtttctgatacgtgttgttattcacctatcttgctgacccaaattcctaaaatctctccatgactcatt 39657140  T

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