View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19404_low_6 (Length: 348)

Name: NF19404_low_6
Description: NF19404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19404_low_6
NF19404_low_6
[»] chr2 (7 HSPs)
chr2 (144-305)||(45082547-45082708)
chr2 (1-142)||(30266314-30266461)
chr2 (40-142)||(25616843-25616945)
chr2 (38-107)||(42847959-42848028)
chr2 (144-213)||(45040589-45040658)
chr2 (38-97)||(45632374-45632433)
chr2 (38-104)||(42848608-42848674)
[»] chr1 (4 HSPs)
chr1 (38-142)||(23732891-23732995)
chr1 (38-97)||(19534730-19534789)
chr1 (90-142)||(14237386-14237438)
chr1 (61-97)||(51097551-51097587)
[»] chr8 (6 HSPs)
chr8 (44-112)||(44495085-44495153)
chr8 (144-231)||(29378191-29378278)
chr8 (90-142)||(9044179-9044231)
chr8 (90-142)||(16723676-16723728)
chr8 (90-142)||(23546138-23546190)
chr8 (90-142)||(23546909-23546961)
[»] chr5 (6 HSPs)
chr5 (38-125)||(4427880-4427967)
chr5 (38-108)||(33573280-33573350)
chr5 (90-142)||(14098489-14098541)
chr5 (38-107)||(14098379-14098448)
chr5 (38-107)||(41609534-41609603)
chr5 (38-107)||(210403-210472)
[»] chr4 (8 HSPs)
chr4 (41-130)||(5941337-5941426)
chr4 (38-108)||(50185305-50185375)
chr4 (38-107)||(49648187-49648256)
chr4 (90-142)||(43428469-43428521)
chr4 (38-107)||(24844112-24844181)
chr4 (61-97)||(11380967-11381003)
chr4 (90-142)||(19638096-19638148)
chr4 (38-106)||(51702695-51702763)
[»] chr3 (10 HSPs)
chr3 (38-107)||(46889353-46889422)
chr3 (38-142)||(20111854-20111958)
chr3 (38-97)||(1093209-1093268)
chr3 (38-107)||(37915435-37915504)
chr3 (38-107)||(49308157-49308226)
chr3 (38-107)||(53467242-53467311)
chr3 (42-97)||(50704311-50704366)
chr3 (60-97)||(36863922-36863959)
chr3 (90-142)||(11617409-11617461)
chr3 (90-142)||(40934833-40934885)
[»] chr7 (9 HSPs)
chr7 (38-97)||(42745671-42745730)
chr7 (38-108)||(42418172-42418242)
chr7 (38-107)||(9146091-9146160)
chr7 (38-111)||(12294226-12294299)
chr7 (38-107)||(32577325-32577394)
chr7 (90-142)||(43448522-43448574)
chr7 (60-97)||(31077732-31077769)
chr7 (38-110)||(12293490-12293562)
chr7 (90-142)||(19068458-19068510)
[»] chr6 (2 HSPs)
chr6 (38-135)||(18970606-18970703)
chr6 (90-142)||(20508604-20508656)
[»] scaffold1370 (1 HSPs)
scaffold1370 (84-142)||(195-253)
[»] scaffold0136 (1 HSPs)
scaffold0136 (45-107)||(23689-23751)
[»] scaffold0159 (1 HSPs)
scaffold0159 (90-142)||(28147-28199)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 45082708 - 45082547
Alignment:
Q  144 gatgggtgataaatacaagttgatcgtgaaggatctagtgaaaaaactaagagtagtggctacgttgcagacatgtgatgatgtgcaacaataaagtgtg 243  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  45082708 gatgggtgataaatacaagttgaccgtggaggatctagtgaaaaaactaagagtagtggctacgttgcaggcatgtgatgatgtgcaacagtgaagtgtg 45082609  T
Q  244 cttaaggcaagtaaattactacctgggatttgagaagtttcgattaaagtcattgctaatca 305  Q
    |||||||| ||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  45082608 cttaaggccagtaatttagtacttgggatttgagaagtttcgattaaagccattgctaatca 45082547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 30266461 - 30266314
Alignment:
Q  1 tggagaagagaaaaggtggatgttacattgcatgaca------aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctc 94  Q
    ||||||||||||||||||||||||||| | ||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30266461 tggagaagagaaaaggtggatgttacagtccatgaccctttttaaagagcaattaaatctgaagtgttgatttagatccaacggtctaaattaattcctc 30266362  T
Q  95 tcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    |||| ||||||||||||| ||||| |||||| ||||||||||||||||    
T  30266361 tcaccctctcatttaaaaagtgctctcatttgaaatgccctatatata 30266314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 25616945 - 25616843
Alignment:
Q  40 agagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatat 139  Q
    ||||||||||||| |||||  |||||||| |||||||||||||| |||||| ||||||| ||||||||||||| || || |||||| ||||||| |||||    
T  25616945 agagcaattaaatctgaagccttgatttaaatccaacggtctaagttaatttctctcaccctctcatttaaaaagtcctctcatttgaaatgccatatat 25616846  T
Q  140 ata 142  Q
    |||    
T  25616845 ata 25616843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 42848028 - 42847959
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    |||| |||||||||| ||||| |||||||||||||||| |||| ||| ||||||||||||| ||||||||    
T  42848028 aaagtgcaattaaatctgaagcgttgatttagatccaatggtccaaactaattcctctcaccctctcatt 42847959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 45040589 - 45040658
Alignment:
Q  144 gatgggtgataaatacaagttgatcgtgaaggatctagtgaaaaaactaagagtagtggctacgttgcag 213  Q
    ||||||||| |||||||| ||||   | ||||| ||||||||||||||||||||||||||||||||||||    
T  45040589 gatgggtgacaaatacaacttgacaataaaggacctagtgaaaaaactaagagtagtggctacgttgcag 45040658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 45632374 - 45632433
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctca 97  Q
    |||| |||||||||| | ||| |||||||||||||||||||| |||||||||||||||||    
T  45632374 aaagtgcaattaaatctaaagcgttgatttagatccaacggtttaaattaattcctctca 45632433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 42848608 - 42848674
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctc 104  Q
    |||| |||||||||| ||||| |||||||||||| |||||||| |||||||||| |||||| |||||    
T  42848608 aaagtgcaattaaatctgaagcgttgatttagattcaacggtccaaattaattcttctcaccctctc 42848674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 23732891 - 23732995
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaaaggtgctttcatttaaaatgccctat 137  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |  ||| ||||||| |||    
T  23732891 aaagaacaattaaatctgaagtgttgatttagatctaacggtctaaattaattcctctcaccctctcatttaaaaagtgctctattttgaaatgccatat 23732990  T
Q  138 atata 142  Q
    |||||    
T  23732991 atata 23732995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 19534730 - 19534789
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctca 97  Q
    |||||||| || |||||||   ||||||||||||||||| |||||||||||| |||||||    
T  19534730 aaagagcattttaatttgagccgttgatttagatccaacagtctaaattaatccctctca 19534789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 14237386 - 14237438
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| ||||| | |||| ||||||| ||||||||    
T  14237386 tcctctcaccctctcatttaaaaagtgctcttatttgaaatgccatatatata 14237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 51097587 - 51097551
Alignment:
Q  61 ttgatttagatccaacggtctaaattaattcctctca 97  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  51097587 ttgatttaaatccaacggtcgaaattaattcctctca 51097551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 44495085 - 44495153
Alignment:
Q  44 caattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaaa 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44495085 caattaaatttgaagcgttgatttagatccaacggtctaaattaattcctctcaccctctcatttaaaa 44495153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 29378191 - 29378278
Alignment:
Q  144 gatgggtgataaatacaagttgatcgtgaaggatctagtgaaaaaactaagagtagtggctacgttgcagacatgtgatgatgtgcaa 231  Q
    ||||||| |||||||||| ||||  |||||||||||||||||||||||||||| |||||||| ||||||  |||||||||||||||||    
T  29378191 gatgggtaataaatacaacttgacagtgaaggatctagtgaaaaaactaagagaagtggctatgttgcaagcatgtgatgatgtgcaa 29378278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 9044231 - 9044179
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| ||  | |||||||||||||||||||||||    
T  9044231 tcctctcaccctctcatttaaaaagtcatctcatttaaaatgccctatatata 9044179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 16723728 - 16723676
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||| ||| || || |||||| ||||||||||||||||    
T  16723728 tcctctcaccctctcattttaaaagtcctctcatttgaaatgccctatatata 16723676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 23546190 - 23546138
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| |  || |||||| ||||||||||||||||    
T  23546190 tcctctcaccctctcatttaaaatgccctctcatttgaaatgccctatatata 23546138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 23546909 - 23546961
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| |  || |||||| ||||||||||||||||    
T  23546909 tcctctcaccctctcatttaaaaagctctctcatttgaaatgccctatatata 23546961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 4427967 - 4427880
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaaaggtgctttcattt 125  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||| ||  ||||||||    
T  4427967 aaagagcaattaaatttaaagtgtcgatttagattcaacggtctaaattaattcctctcaccctctaatttaaaaagtcttttcattt 4427880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 33573350 - 33573280
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcattt 108  Q
    ||||| ||||||||| ||| | |||||||| |||| ||||||||||||||||||||||||  |||||||||    
T  33573350 aaagaacaattaaatctgaggcgttgattttgatctaacggtctaaattaattcctctcagcctctcattt 33573280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 14098541 - 14098489
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| || || |||||||||||||||||||||||    
T  14098541 tcctctcaccctctcatttaaaaagtcctctcatttaaaatgccctatatata 14098489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 14098379 - 14098448
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||||||||||||| ||||| |||||||| | ||||| |||| |||||||||||| |||  ||||||||    
T  14098379 aaagagcaattaaatctgaagcgttgattttgttccaatggtccaaattaattcctgtcatcctctcatt 14098448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 41609603 - 41609534
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||||||||||||| ||| | |||||||| ||||||| |||  ||||||||||||||||  ||||||||    
T  41609603 aaagagcaattaaatctgatgcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 41609534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 210403 - 210472
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||||||||||||| | ||| |||||||| ||||||| |||| | |||||||||| |||  ||||||||    
T  210403 aaagagcaattaaatctaaagcgttgattttgatccaatggtccagattaattcctttcatcctctcatt 210472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 5941337 - 5941426
Alignment:
Q  41 gagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaaaggtgctttcatttaaaat 130  Q
    ||||||||| || ||||| ||||||||||||| ||| ||||| ||||||||||||||| ||||| ||||||| || || |||||||||||    
T  5941337 gagcaattatatctgaagcgttgatttagatctaactgtctatattaattcctctcaccctctcgtttaaaaagtcctctcatttaaaat 5941426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 50185375 - 50185305
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcattt 108  Q
    ||||| ||||||||| ||| | |||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  50185375 aaagaacaattaaatctgaggcgttgattttgatctaacggtctaaattaattcctctcaccctctcattt 50185305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 49648187 - 49648256
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    |||| |||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||| ||||||||    
T  49648187 aaagtgcaattaaatctgaagcgttgatttagattaaatggtccaaattaattcctctcaccctctcatt 49648256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 43428521 - 43428469
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| || || |||||||||||||||| ||||||    
T  43428521 tcctctcaccctctcatttaaaaagtcctctcatttaaaatgccctttatata 43428469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 24844181 - 24844112
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||||||||||||| ||||| |||||||| ||||||| |||  | ||||||| ||||||  ||||||||    
T  24844181 aaagagcaattaaatctgaagcgttgattttgatccaatggttcagattaatttctctcattctctcatt 24844112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 11380967 - 11381003
Alignment:
Q  61 ttgatttagatccaacggtctaaattaattcctctca 97  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  11380967 ttgatttaaatccaacggtcgaaattaattcctctca 11381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 19638148 - 19638096
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| |||||||||||||  | || |||||| ||||||||||||||||    
T  19638148 tcctctcaccctctcatttaaaaattcctctcatttgaaatgccctatatata 19638096  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 51702763 - 51702695
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcat 106  Q
    ||||||||||||||| ||||  |||||||| ||||||| | || | ||||||||||||||  |||||||    
T  51702763 aaagagcaattaaatctgaaacgttgattttgatccaatgatccagattaattcctctcatcctctcat 51702695  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 46889422 - 46889353
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||| ||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  46889422 aaagaacaattaaatctgaggtgttgattttgatctaacggtctaaattaattcctctcaccctctcatt 46889353  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 20111854 - 20111958
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaaaggtgctttcatttaaaatgccctat 137  Q
    |||||| |||||||||||||| || ||||||||||||||| || ||||||||||||||||  ||||||||| ||| || || | |||| ||||| | |||    
T  20111854 aaagagtaattaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcattttaaaagtcctcttatttgaaatgtcatat 20111953  T
Q  138 atata 142  Q
    |||||    
T  20111954 atata 20111958  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 1093268 - 1093209
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctca 97  Q
    |||||||||| | || ||||  ||||||||||||||||||||||||||||||||||||||    
T  1093268 aaagagcaataacatctgaaacgttgatttagatccaacggtctaaattaattcctctca 1093209  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 37915504 - 37915435
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||| ||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||  ||||||||    
T  37915504 aaagaacaattaaatctgaagcgttgattttgatccaatggtctagattaattcctctcatcctctcatt 37915435  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 49308226 - 49308157
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||||||||||||| ||||| |||||||| ||||||| | || ||||||||||||||||  ||||||||    
T  49308226 aaagagcaattaaatctgaagcgttgattttgatccaatgatccaaattaattcctctcatcctctcatt 49308157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 53467242 - 53467311
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||||||||||||||||||| |||||||| ||||||| | || | ||||||||||||||  ||||||||    
T  53467242 aaagagcaattaaatttgaagcgttgattttgatccaatgatccagattaattcctctcatcctctcatt 53467311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 50704311 - 50704366
Alignment:
Q  42 agcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctca 97  Q
    ||||||||||| ||||| |||||||| ||||||| |||| | ||||||||||||||    
T  50704311 agcaattaaatctgaagcgttgattttgatccaatggtccagattaattcctctca 50704366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 36863959 - 36863922
Alignment:
Q  60 gttgatttagatccaacggtctaaattaattcctctca 97  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  36863959 gttgatttagatccaacagtctaaattaatccctctca 36863922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 11617461 - 11617409
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| |||||||||||||  |||||| |||| ||||||| ||||||||    
T  11617461 tcctctcaccctctcatttaaaaaatgcttttatttgaaatgccatatatata 11617409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 40934833 - 40934885
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| || || | |||| ||||||||||||||||    
T  40934833 tcctctcaccctctcatttaaaatgtcctcttatttgaaatgccctatatata 40934885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 42745730 - 42745671
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctca 97  Q
    |||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||    
T  42745730 aaagtgcaattaaatctgaagcgttgatttagatccaacggtccaaattaattcctctca 42745671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 42418172 - 42418242
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcattt 108  Q
    ||||| ||||||||| ||| | |||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  42418172 aaagaacaattaaatctgaggcgttgattttgatctaacggtctaaattaattcctctcaccctctcattt 42418242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 9146160 - 9146091
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||| ||||||||| ||||| |||||||| |||||||  ||| ||||||||||||||||  ||||||||    
T  9146160 aaagaacaattaaatctgaagcgttgattttgatccaaatgtccaaattaattcctctcatcctctcatt 9146091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 12294226 - 12294299
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaa 111  Q
    ||||||||||||||| ||||| |||||||| ||||||| |||  | |||||||| |||||  ||||||||||||    
T  12294226 aaagagcaattaaatatgaagcgttgattttgatccaatggttcagattaattcatctcatcctctcatttaaa 12294299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 32577325 - 32577394
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    ||||||||||||||| ||||| |||||||| ||||||| |||  | ||||||||||||||  ||||||||    
T  32577325 aaagagcaattaaatctgaagcgttgattttgatccaatggttcagattaattcctctcatcctctcatt 32577394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 43448522 - 43448574
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  43448522 tcctctcaccctctcatttaaaaggtcctctcatttgaaatgtcctatatata 43448574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 31077732 - 31077769
Alignment:
Q  60 gttgatttagatccaacggtctaaattaattcctctca 97  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  31077732 gttgattttgatctaacggtctaaattaattcctctca 31077769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 12293562 - 12293490
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaa 110  Q
    ||||| ||||||||| ||||| |||||||| ||||||| | || | ||||||| ||||||  |||||||||||    
T  12293562 aaagaccaattaaatctgaagcgttgattttgatccaatgatccagattaatttctctcatcctctcatttaa 12293490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 19068510 - 19068458
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| || || |||||| ||||||||| ||||||    
T  19068510 tcctctcaccctctcatttaaaaagtcctctcatttgaaatgccctctatata 19068458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 18970606 - 18970703
Alignment:
Q  38 aaagagcaattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatttaaaaggtgctttcatttaaaatgccct 135  Q
    |||||| | |||||||||||| || ||||||||||||||| || ||||||||||||||||  ||||||||| ||| || || | |||| |||||||||    
T  18970606 aaagagtagttaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcattttaaaagtcctcttatttgaaatgccct 18970703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 20508656 - 20508604
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| ||  | |||||| ||||||||||||||||    
T  20508656 tcctctcaccctctcatttaaaaagtcatctcatttgaaatgccctatatata 20508604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 253 - 195
Alignment:
Q  84 attaattcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||| ||||||||  ||||||||||||| || || |||||| ||||||||||||||||    
T  253 attaactcctctcatcctctcatttaaaaagtcctctcatttgaaatgccctatatata 195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 23689 - 23751
Alignment:
Q  45 aattaaatttgaagtgttgatttagatccaacggtctaaattaattcctctcacactctcatt 107  Q
    |||||||| ||||| |||||||| ||||||| | |||| ||||||||||||||  ||||||||    
T  23689 aattaaatctgaagcgttgattttgatccaatgatctatattaattcctctcatcctctcatt 23751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 28199 - 28147
Alignment:
Q  90 tcctctcacactctcatttaaaaggtgctttcatttaaaatgccctatatata 142  Q
    ||||||||| ||||||||||||| || || | |||| ||||||||||||||||    
T  28199 tcctctcaccctctcatttaaaaagtcctcttatttgaaatgccctatatata 28147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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