View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19404_low_8 (Length: 305)

Name: NF19404_low_8
Description: NF19404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19404_low_8
NF19404_low_8
[»] chr8 (3 HSPs)
chr8 (16-288)||(41780636-41780912)
chr8 (212-277)||(9792244-9792309)
chr8 (212-277)||(23897720-23897785)
[»] chr5 (2 HSPs)
chr5 (212-277)||(5070819-5070884)
chr5 (213-277)||(29665355-29665419)
[»] chr4 (4 HSPs)
chr4 (213-270)||(11314440-11314497)
chr4 (228-281)||(22508053-22508106)
chr4 (212-277)||(43050205-43050270)
chr4 (213-277)||(56299726-56299790)
[»] chr6 (1 HSPs)
chr6 (213-277)||(14304387-14304451)
[»] chr3 (1 HSPs)
chr3 (213-277)||(31171566-31171630)
[»] chr2 (1 HSPs)
chr2 (213-261)||(28694488-28694536)
[»] chr1 (1 HSPs)
chr1 (215-263)||(44789311-44789359)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 41780636 - 41780912
Alignment:
Q  16 atcaatagttgtcaagtattcatagcattgttctaatcatcactgagtgacannnnnnnggcgcatnnnnnnn-tgtgactgact--------ataaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||        |||||||||||        |||||||    
T  41780636 atcaatagttgtcaagtattcatagcattgttctaatcatcactgagtgacatttttttggcgcataaaaaaaatgtgactgactttgtttccataaaaa 41780735  T
Q  107 tatgtctgtcgcaaattaaatgtgtttgtcgcataaacaatatgtgattagcaannnnnnnnggacaaatatctgattaacattgtttccataaaaactc 206  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||        ||||||||||| ||||||||||||||||||||||||||    
T  41780736 tatgtctgtcccaaattaaatgtgtttgtcacataaacaatatgtgattagcaattgtttttggacaaatatccgattaacattgtttccataaaaactc 41780835  T
Q  207 tctttaatttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattatgcccttattat 288  Q
    ||||||     ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  41780836 tcttta-----ttctaaagtatatgtcattttacactatgaaagaaatattaatttttatttttctattatgtccttattat 41780912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 9792309 - 9792244
Alignment:
Q  212 aatttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    ||||||||||||| |||||||| ||||||| ||  || ||||||||||| ||  ||||||||||||    
T  9792309 aatttgttccaaattatatgtcgttttacaataccaatgaaatattaatattactttttctattat 9792244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 23897720 - 23897785
Alignment:
Q  212 aatttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    ||||||||||||| ||||||||| |||||| ||  || ||||||||||||||  |||| |||||||    
T  23897720 aatttgttccaaattatatgtcactttacaataccaatgaaatattaatgttatttttcctattat 23897785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 5070819 - 5070884
Alignment:
Q  212 aatttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    ||||||||||||| ||||||||  |||||| ||| || ||||||||||||||  |||| |||||||    
T  5070819 aatttgttccaaattatatgtcgctttacaatatcaatgaaatattaatgttatttttcctattat 5070884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 29665355 - 29665419
Alignment:
Q  213 atttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    |||||| ||||| |||||||| ||||||| ||| || ||||||||||||||  |||| |||||||    
T  29665355 atttgtcccaaattatatgtcgttttacaatatcaatgaaatattaatgttacttttcctattat 29665419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 11314497 - 11314440
Alignment:
Q  213 atttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttattttt 270  Q
    ||||||| |||| ||||| |||||||||| ||| ||||||  ||||||||||||||||    
T  11314497 atttgtttcaaattatatatcattttacaatatcaaagaatcattaatgtttattttt 11314440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 22508053 - 22508106
Alignment:
Q  228 tatgtcattttacactatgaaagaaatattaatgtttatttttctattatgccc 281  Q
    |||||||||||||| ||| || ||| |||||||| ||||||| |||||||||||    
T  22508053 tatgtcattttacaatatcaatgaactattaatgcttattttcctattatgccc 22508106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 43050205 - 43050270
Alignment:
Q  212 aatttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    ||||||||||||| ||||||||  |||||| ||  || ||||||||||||||  ||||||||||||    
T  43050205 aatttgttccaaattatatgtcgctttacaataccaatgaaatattaatgttactttttctattat 43050270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 56299726 - 56299790
Alignment:
Q  213 atttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    |||||||||||| |||||||| ||||||| ||  || |||| |||||||||  ||||||||||||    
T  56299726 atttgttccaaattatatgtcgttttacaatacaaatgaaaaattaatgttactttttctattat 56299790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 14304387 - 14304451
Alignment:
Q  213 atttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    |||||||||||| |||||||| ||||||| ||  || |||| |||||||||  ||||||||||||    
T  14304387 atttgttccaaattatatgtcgttttacaataccaatgaaaaattaatgttactttttctattat 14304451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 31171630 - 31171566
Alignment:
Q  213 atttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtttatttttctattat 277  Q
    |||||||  ||| |||||||| ||||||| ||| || ||||||||||||||  ||||||||||||    
T  31171630 atttgttttaaattatatgtcgttttacaatatcaatgaaatattaatgttactttttctattat 31171566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 28694536 - 28694488
Alignment:
Q  213 atttgttccaaagtatatgtcattttacactatgaaagaaatattaatg 261  Q
    |||||||||||| || ||||||||||||| ||| |||||| ||||||||    
T  28694536 atttgttccaaattacatgtcattttacaatattaaagaattattaatg 28694488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 44789311 - 44789359
Alignment:
Q  215 ttgttccaaagtatatgtcattttacactatgaaagaaatattaatgtt 263  Q
    |||||||||| |||||||| ||||||| ||| || ||||||||||||||    
T  44789311 ttgttccaaattatatgtcgttttacaatatcaatgaaatattaatgtt 44789359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University