View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_high_14 (Length: 318)
Name: NF19405_high_14
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 17280092 - 17279825
Alignment:
| Q |
4 |
agcagagaaattaaaacagtactacttataatataaaataggaaaatgctaacgagtgtctctgagacactttaaaaaccttaaaaattaggtttttatg |
103 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| | ||| ||||| | |||||| ||||||||||||| |
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| T |
17280092 |
agcagagaaattaaaattgtactacctataatataaaatagaaaaatgctaacgagggcctccagaacactct-------ttaaaagttaggtttttatg |
17280000 |
T |
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| Q |
104 |
cgaagttccgatattttgggggcatgagggactacctgatttagatcataataatgatcagtttcacttgcttgtgaaagtcttttgttgtgtaaaggtt |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17279999 |
cgaagttccgttattttgggggcatgagggactacctgatttagatcataataatgatcagtttcacttgcttgtgaaagtcttttgttgtgtaaaggtt |
17279900 |
T |
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| Q |
204 |
gaagttcttgattgatattcctcgatctgaagggaaacgaaaggatgtgaaagaagttaataatcataatgtgat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17279899 |
gaagttcttgattgatattcctcgatctgaagggaaatgaaaggatgtgaaagaagttaataatcataatgtgat |
17279825 |
T |
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