View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_high_24 (Length: 245)
Name: NF19405_high_24
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 49057348 - 49057209
Alignment:
| Q |
87 |
ataagacttattcttattgcttacctaaaaaacttatacaagctcggggcataacaaaaacaatataggtgttgtgtcaaaatttaacacctccgtatgc |
186 |
Q |
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| T |
49057348 |
ataagacttattcttattgcttac-taaaaaactcatacaagctcgaggcataacaaaaacaatataggtgttgtgtcaaaatttaacacctccgtatgc |
49057250 |
T |
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| Q |
187 |
tcttttctcaactcaagtttgcatagtcgtatattggttag |
227 |
Q |
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| T |
49057249 |
tcttttctcaactcaagtttgcatagtcgtatattggttag |
49057209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 49057403 - 49057336
Alignment:
| Q |
1 |
ttttcataatgaataaagatcaaaagtcgtcacaatgggataaaagtgattatttataagacttattc |
68 |
Q |
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| T |
49057403 |
ttttcataatgaataaagatcaaaagtcatcacaatgggataagagtgattatttataagacttattc |
49057336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 48872347 - 48872404
Alignment:
| Q |
1 |
ttttcataatgaataaagatcaaaagtcgtcacaatgggataaaagtgattatttata |
58 |
Q |
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| T |
48872347 |
ttttcattatgaacaaagatcaaaagtcttcactatgggataaaagtaatcatttata |
48872404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 48877651 - 48877708
Alignment:
| Q |
1 |
ttttcataatgaataaagatcaaaagtcgtcacaatgggataaaagtgattatttata |
58 |
Q |
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||||||| ||||| |||||||||||||| |||| ||||||||||||| || ||||||| |
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| T |
48877651 |
ttttcattatgaacaaagatcaaaagtcttcactatgggataaaagtaatcatttata |
48877708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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