View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_high_27 (Length: 228)
Name: NF19405_high_27
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_high_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 49057625 - 49057400
Alignment:
| Q |
1 |
ttttgtgtgttctctaattttagtggactctaagttgttgaaatttctgtttaannnnnnnnnnngaataaaaaatttctgtttatttaaaaggnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
49057625 |
ttttgtgtgttctctaattttagtggactctaagttgttgaaatttctgtttaatttttttttt-gaataaaaaatttctgtttaattaaaaggaaaaaa |
49057527 |
T |
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| Q |
101 |
nntctatttttaaattaatgggccacaatatgaacctatatagtgctaccagaatttcatgaacctatcataagtaaaatgaaattatgaacctatacag |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49057526 |
a-tctatttttaaataaatgggccacaatatgaacctatatagtgctaccagaatttcatgaacctatcataagtaaaatgaaattatgaacctatacag |
49057428 |
T |
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| Q |
201 |
tgatcctacaatttcattttagagtttt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49057427 |
tgatcctacaatttcattttagagtttt |
49057400 |
T |
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