View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_high_5 (Length: 395)
Name: NF19405_high_5
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 73 - 349
Target Start/End: Complemental strand, 13654702 - 13654426
Alignment:
| Q |
73 |
ttaatatgaaactttaatgtttgttgtgtttttaaagtgtgtgaatgttgagcacagtgcaaagaaaaagtaaaagagactaaatctgtggtgtggtgtt |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13654702 |
ttaatatgaaactttaatgtttgttgtgtttttaaagtgtgtgaatgttgagcacagtgcaaagaaaaagtaaaagagactaaatctgtggtgtggtgtt |
13654603 |
T |
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| Q |
173 |
gttggtttcttctgctactcctcacaacacaaaccaaccatttctgtttcaacaacaacatcaaaaggtaaatgtaaatcaccacctcttcaactttcct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13654602 |
gttggtttcttctgctactcctcacaacacaaaccaaccatttctgtttcaacaacaacatcaaaaggtaaatgtaaatcaccacctcttcaactttcct |
13654503 |
T |
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| Q |
273 |
ttcttttctctctgtttccctacaaaatctctcttcaactgaccaaccaacatcaaaggtttttcaaatttacaacc |
349 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13654502 |
ttcttttctctctgtttccctagaaaatctctcttcaacagaccaaccaacatcaaaggtttttcaaatttacaacc |
13654426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 73 - 349
Target Start/End: Complemental strand, 13713345 - 13713069
Alignment:
| Q |
73 |
ttaatatgaaactttaatgtttgttgtgtttttaaagtgtgtgaatgttgagcacagtgcaaagaaaaagtaaaagagactaaatctgtggtgtggtgtt |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13713345 |
ttaatatgaaactttaatgtttgttgtgtttttaaagtgtgtgaatgttgagcacagtgcaaagaaaaagtaaaagagactaaatctgtggtgtggtgtt |
13713246 |
T |
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| Q |
173 |
gttggtttcttctgctactcctcacaacacaaaccaaccatttctgtttcaacaacaacatcaaaaggtaaatgtaaatcaccacctcttcaactttcct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13713245 |
gttggtttcttctgctactcctcacaacacaaaccaaccatttctgtttcaacaacaacatcaaaaggtaaatgtaaatcaccacctcttcaactttcct |
13713146 |
T |
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| Q |
273 |
ttcttttctctctgtttccctacaaaatctctcttcaactgaccaaccaacatcaaaggtttttcaaatttacaacc |
349 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13713145 |
ttcttttctctctgtttccctagaaaatctctcttcaacagaccaaccaacatcaaaggtttttcaaatttacaacc |
13713069 |
T |
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