View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19405_low_10 (Length: 339)

Name: NF19405_low_10
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19405_low_10
NF19405_low_10
[»] chr3 (3 HSPs)
chr3 (137-323)||(18161265-18161451)
chr3 (1-119)||(18160983-18161104)
chr3 (24-84)||(19407206-19407263)
[»] chr1 (1 HSPs)
chr1 (164-324)||(33899020-33899185)
[»] chr6 (3 HSPs)
chr6 (233-290)||(6796471-6796528)
chr6 (239-288)||(7441269-7441318)
chr6 (260-288)||(33823151-33823179)
[»] chr8 (7 HSPs)
chr8 (229-323)||(5831587-5831683)
chr8 (164-323)||(19459358-19459523)
chr8 (164-323)||(19557036-19557201)
chr8 (210-311)||(19403273-19403373)
chr8 (247-309)||(19409205-19409267)
chr8 (247-309)||(19456224-19456286)
chr8 (247-309)||(19524791-19524853)
[»] scaffold0653 (1 HSPs)
scaffold0653 (258-288)||(964-994)
[»] chr7 (2 HSPs)
chr7 (258-288)||(9287323-9287353)
chr7 (258-288)||(9297115-9297145)
[»] chr4 (1 HSPs)
chr4 (258-288)||(35752692-35752722)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 18161265 - 18161451
Alignment:
Q  137 ccttagggtgctttcttgataaagaataagaagagaaataatctatgagggagaccacatggtagaatgacaccgttccaatccatttaaagatcaaata 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18161265 ccttagggtgcttttttgataaagaataagaagagaaataatctaggagagagaccacatggtagaatgacaccattccaatccatttaaagatcaaata 18161364  T
Q  237 ccaaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaac 323  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18161365 ccaaatttccgctaccaagttacatcgacaaaacaagtgatcctccacctctcgtttcctcggacaccacacacaatccgatctaac 18161451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 18160983 - 18161104
Alignment:
Q  1 ctaccttatgtactgaatgaaagga--aagaatgaattaagcagaatataatgtagctaga-agagttgactccactgacagtgtattttattgtgtttc 97  Q
    ||||||||||||| |||||||||||  || ||||||||||||||||||||||| |  |||  || |||||||||||||||||||||||||||||  ||||    
T  18160983 ctaccttatgtacagaatgaaaggagaaataatgaattaagcagaatataatgaatgtagccagggttgactccactgacagtgtattttattgcatttc 18161082  T
Q  98 tgattcttaaattcctgcatta 119  Q
    ||||||||||||||||||||||    
T  18161083 tgattcttaaattcctgcatta 18161104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 19407206 - 19407263
Alignment:
Q  24 gaaagaatgaattaagcagaatataatgtagctagaagagttgactccactgacagtgtat 84  Q
    |||| |||||||||||||||||||||||| ||    |||||||||||||| ||||||||||    
T  19407206 gaaataatgaattaagcagaatataatgttgc---cagagttgactccacggacagtgtat 19407263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 33899020 - 33899185
Alignment:
Q  164 aagaagagaaataatctatgagggagaccacat-----ggtagaatgacaccgttccaatccatttaaagatcaaataccaaatttccgcaaccaagtta 258  Q
    ||||||| |||| ||||| |||||| |||||||     ||||||||||| ||||| ||||||||||||| ||| |||| || ||||||||||| ||||||    
T  33899020 aagaagataaatgatctaggagggaaaccacattttagggtagaatgaccccgttacaatccatttaaaaatcgaatatcatatttccgcaacaaagtta 33899119  T
Q  259 catctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaact 324  Q
    ||||| |||||||||||||| |  |||||| |  |||||| |||||||||||||||| | ||||||    
T  33899120 catctgcaaaacaagtgatcatttacctcttgaatcctcaaacaccacacacaatccaaactaact 33899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 6796471 - 6796528
Alignment:
Q  233 aataccaaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctctcg 290  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  6796471 aataccaaatttccgcaacaaagttacatctacaaaacaagtgatcctccatctctcg 6796528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 7441318 - 7441269
Alignment:
Q  239 aaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctct 288  Q
    ||||||||  ||| ||||||||||||||||||||||||| ||||||||||    
T  7441318 aaatttccataacaaagttacatctacaaaacaagtgattctccacctct 7441269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 33823151 - 33823179
Alignment:
Q  260 atctacaaaacaagtgatcctccacctct 288  Q
    |||||||||||||||||||||||||||||    
T  33823151 atctacaaaacaagtgatcctccacctct 33823179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 5831587 - 5831683
Alignment:
Q  229 atcaaataccaaatttccgcaaccaagttacatctacaaaacaagtgatcctc--cacctctcgtttcctcagacaccacacacaatccgatctaac 323  Q
    ||||||||| |||||||| |||| || ||| ||||||||||||||||||||||  ||||||| |  ||||||||||||||||||||| ||| |||||    
T  5831587 atcaaatactaaatttccacaacaaaattagatctacaaaacaagtgatcctccacacctcttgaatcctcagacaccacacacaattcgaactaac 5831683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 19459358 - 19459523
Alignment:
Q  164 aagaagagaaataatctatgagggagaccacat-----ggtagaatga-caccgttccaatccatttaaagatcaaataccaaatttccgcaaccaagtt 257  Q
    |||||||||||||||||| |||||| || |||      |||||||||| | ||||||| ||||||||||| ||  |||| ||||| || |||   |||||    
T  19459358 aagaagagaaataatctaggagggaaacaacacttctaggtagaatgatctccgttccgatccatttaaaaattgaatatcaaatgtctgcagtgaagtt 19459457  T
Q  258 acatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaac 323  Q
    |||||||||||| ||| ||||||||||||||||  ||||  |||||||| |||||||||| |||||    
T  19459458 acatctacaaaataagcgatcctccacctctcgaatccttggacaccacccacaatccgaactaac 19459523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 19557036 - 19557201
Alignment:
Q  164 aagaagagaaataatctatgagggagaccacat-----ggtagaatga-caccgttccaatccatttaaagatcaaataccaaatttccgcaaccaagtt 257  Q
    |||||||||||||||||| |||||| || |||      |||||||||| | ||||||| ||||||||||| ||  |||| ||||| || |||   |||||    
T  19557036 aagaagagaaataatctaggagggaaacaacacttctaggtagaatgatctccgttccgatccatttaaaaattgaatatcaaatgtctgcagtgaagtt 19557135  T
Q  258 acatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacacacaatccgatctaac 323  Q
    |||||||||||| ||| ||||||||||||||||  ||||  |||||||| |||||||||| |||||    
T  19557136 acatctacaaaataagcgatcctccacctctcgaatccttggacaccacccacaatccgaactaac 19557201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 19403373 - 19403273
Alignment:
Q  210 cgttccaatccatttaaagatcaaataccaaatttccgcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacaca 309  Q
    |||||| ||||||||||| ||| |||||||||| || ||||  |||||| |||||||||||||||||||||||| ||||||  | ||  |||||||||||    
T  19403373 cgttccgatccatttaaaaatcgaataccaaatgtctgcaatgaagtta-atctacaaaacaagtgatcctccagctctcgaattctaggacaccacaca 19403275  T
Q  310 ca 311  Q
    ||    
T  19403274 ca 19403273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 19409267 - 19409205
Alignment:
Q  247 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacaca 309  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||  ||||  |||||||||||    
T  19409267 gcaacgaagttacttctacaaaacaagtgatccttcacctctcgaatcctaggacaccacaca 19409205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 19456286 - 19456224
Alignment:
Q  247 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacaca 309  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||  ||||  |||||||||||    
T  19456286 gcaacgaagttacttctacaaaacaagtgatccttcacctctcgaatcctaggacaccacaca 19456224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 19524791 - 19524853
Alignment:
Q  247 gcaaccaagttacatctacaaaacaagtgatcctccacctctcgtttcctcagacaccacaca 309  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||  ||||  |||||||||||    
T  19524791 gcaacgaagttacttctacaaaacaagtgatccttcacctctcgaatcctaggacaccacaca 19524853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Complemental strand, 994 - 964
Alignment:
Q  258 acatctacaaaacaagtgatcctccacctct 288  Q
    |||||||||||||||||||||||||||||||    
T  994 acatctacaaaacaagtgatcctccacctct 964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 9287323 - 9287353
Alignment:
Q  258 acatctacaaaacaagtgatcctccacctct 288  Q
    |||||||||||||||||||||||||||||||    
T  9287323 acatctacaaaacaagtgatcctccacctct 9287353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 9297115 - 9297145
Alignment:
Q  258 acatctacaaaacaagtgatcctccacctct 288  Q
    |||||||||||||||||||||||||||||||    
T  9297115 acatctacaaaacaagtgatcctccacctct 9297145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 35752692 - 35752722
Alignment:
Q  258 acatctacaaaacaagtgatcctccacctct 288  Q
    |||||||||||||||||||||||||||||||    
T  35752692 acatctacaaaacaagtgatcctccacctct 35752722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University