View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_low_11 (Length: 339)
Name: NF19405_low_11
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 56 - 325
Target Start/End: Complemental strand, 7346714 - 7346445
Alignment:
| Q |
56 |
attattttcaattttttacaaattggagattcaagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaa |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346714 |
attattttcaattttttacaaattggagattcaagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaa |
7346615 |
T |
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| Q |
156 |
caatcgaaatgagattgttgcnnnnnnnatgcgacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccgg |
255 |
Q |
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| T |
7346614 |
caatcgaaatgagattgttgctttttttatgcaacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccgg |
7346515 |
T |
|
| Q |
256 |
cgaattttttaacgtcacttatctaataccttcacatctctgattctgcctctctacttctgttgaacct |
325 |
Q |
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| T |
7346514 |
cgaattttttaacgtcacttatctaataccttcacatctctgattctgcctctctacctcggttgaacct |
7346445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 7346877 - 7346828
Alignment:
| Q |
11 |
cataggatattagtgtagtttcttcttttatctacaaatgttgatattat |
60 |
Q |
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| T |
7346877 |
cataggatattagtgtagtttcttcttttatctacaaatgttgatattat |
7346828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 53400823 - 53401065
Alignment:
| Q |
58 |
tattttcaattttttacaaattggagattcaagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaaca |
157 |
Q |
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| T |
53400823 |
tattttcaatttttgacaaattggagattcaagattcttcaagttgtagaagtgagattgaaaatcatta------aattcaaaatcgaaatga------ |
53400910 |
T |
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| Q |
158 |
atcgaaatgagattgttgcnnnnnnnatgcgacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcg |
257 |
Q |
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| T |
53400911 |
----------gattgttgctttgg---tgcgacgacggagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccggcg |
53400997 |
T |
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| Q |
258 |
aattttttaacgtcacttatctaataccttcacatctctgattctgcctctctacttctgttgaacct |
325 |
Q |
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| T |
53400998 |
aattttttaacgtcacttatctaataccttcacatctctgattctgcctctctacttctgttgaacct |
53401065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 9963082 - 9962960
Alignment:
| Q |
56 |
attattttcaattttttacaaattggagattcaagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaa |
155 |
Q |
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||||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| || |||||| |
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| T |
9963082 |
attatcttcaatttttgagaaattggagattcaagattcttcaagttgtagaaatgagattgaaaatcttcaggaagaaattcagaatcggaacgaagaa |
9962983 |
T |
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| Q |
156 |
caatcgaaat--gagattgttgc |
176 |
Q |
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||||| |||| ||||||||||| |
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| T |
9962982 |
caatcaaaatcggagattgttgc |
9962960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 53400648 - 53400696
Alignment:
| Q |
12 |
ataggatattagtgtagtttcttcttttatctacaaatgttgatattat |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53400648 |
ataggatattagtgtagtttcttcttttatctacaaatgttgatattat |
53400696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 9962900 - 9962845
Alignment:
| Q |
202 |
cgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcg |
257 |
Q |
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||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||| |
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| T |
9962900 |
cgggaaatgatggccgtctacggcggaatcagtcgatggaggtggtggttccggcg |
9962845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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