View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_low_12 (Length: 336)
Name: NF19405_low_12
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 6985217 - 6985399
Alignment:
| Q |
1 |
ttcaacaattacaactaacaaataaacctatgtaccnnnnnnnnnnnnncaattaacaaacacccaccacatggatcttaccaaaccctcaattaccaag |
100 |
Q |
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| T |
6985217 |
ttcaacaataacaactaacaaatacacctatgtaccaaaaataaaaaaacaattaacaaacacccaccacatggatcttaccaaaccctcaattaccaag |
6985316 |
T |
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| Q |
101 |
agattcatat-aaaatcatttacaaaact-attaaaccagagagtttgggtttgatctaaattttatacttctctcaagtgat |
181 |
Q |
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| T |
6985317 |
agattcatataaaaatcatttacaaaactaattaaaccagagaatttgggtttgatctaaattttatacttctctcaagtgat |
6985399 |
T |
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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 6985442 - 6985538
Alignment:
| Q |
222 |
tccaatgttttagatttgagtagggacaaagtctcaatgtgtatcacggtagatttgctcaaattacatttgtttaccgaaattctgacaaattcac |
318 |
Q |
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| T |
6985442 |
tccaatgttttagatttgagtagtgacaaagtctcaatgtgtatcacggtagatttgctcaaattacatttgtttattgaaattctgacaaattcac |
6985538 |
T |
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