View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19405_low_2 (Length: 432)

Name: NF19405_low_2
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19405_low_2
NF19405_low_2
[»] chr1 (14 HSPs)
chr1 (16-424)||(50751054-50751462)
chr1 (278-387)||(19413103-19413212)
chr1 (197-245)||(6932116-6932164)
chr1 (184-235)||(5268311-5268362)
chr1 (178-233)||(28024546-28024601)
chr1 (182-243)||(5410697-5410758)
chr1 (185-222)||(7335907-7335944)
chr1 (183-222)||(4347033-4347072)
chr1 (188-222)||(40352455-40352489)
chr1 (211-245)||(47725165-47725199)
chr1 (211-245)||(47732157-47732191)
chr1 (192-245)||(47978366-47978419)
chr1 (188-236)||(27801666-27801714)
chr1 (184-216)||(37724370-37724402)
[»] chr7 (16 HSPs)
chr7 (182-245)||(45557455-45557518)
chr7 (182-241)||(29829305-29829364)
chr7 (188-235)||(117861-117908)
chr7 (184-222)||(38510377-38510415)
chr7 (182-235)||(40491668-40491721)
chr7 (188-233)||(44856735-44856780)
chr7 (169-222)||(48459752-48459805)
chr7 (183-235)||(4228603-4228655)
chr7 (189-221)||(7276053-7276085)
chr7 (182-222)||(15311230-15311270)
chr7 (184-216)||(23783202-23783234)
chr7 (183-219)||(26975314-26975350)
chr7 (188-236)||(32187001-32187049)
chr7 (183-243)||(36920171-36920231)
chr7 (188-236)||(41715718-41715766)
chr7 (182-222)||(44967413-44967453)
[»] chr4 (8 HSPs)
chr4 (188-245)||(33843807-33843864)
chr4 (183-235)||(21743088-21743139)
chr4 (188-235)||(36150629-36150676)
chr4 (189-222)||(55638782-55638815)
chr4 (184-245)||(55647993-55648054)
chr4 (188-220)||(17898085-17898117)
chr4 (182-242)||(20712749-20712809)
chr4 (188-236)||(48550242-48550290)
[»] chr8 (6 HSPs)
chr8 (182-236)||(16972005-16972059)
chr8 (183-222)||(19649229-19649268)
chr8 (182-221)||(38875211-38875250)
chr8 (119-149)||(11038125-11038155)
chr8 (119-149)||(13929819-13929849)
chr8 (188-236)||(36779439-36779487)
[»] chr6 (7 HSPs)
chr6 (188-245)||(34911039-34911095)
chr6 (176-245)||(28466916-28466985)
chr6 (176-245)||(34736748-34736817)
chr6 (121-149)||(19260995-19261023)
chr6 (179-243)||(29409257-29409321)
chr6 (169-245)||(34620963-34621039)
chr6 (169-245)||(34748400-34748476)
[»] chr3 (12 HSPs)
chr3 (182-239)||(3776612-3776669)
chr3 (182-235)||(37334976-37335029)
chr3 (183-222)||(7012675-7012714)
chr3 (182-245)||(31084241-31084304)
chr3 (189-220)||(35132231-35132262)
chr3 (183-222)||(44225600-44225639)
chr3 (188-222)||(10852740-10852774)
chr3 (188-222)||(23918882-23918916)
chr3 (189-235)||(24916581-24916627)
chr3 (188-222)||(42644302-42644336)
chr3 (188-245)||(29252129-29252186)
chr3 (189-241)||(35951128-35951180)
[»] chr2 (12 HSPs)
chr2 (182-223)||(4119381-4119422)
chr2 (188-245)||(10918652-10918709)
chr2 (182-234)||(15220804-15220856)
chr2 (182-245)||(3853943-3854006)
chr2 (183-222)||(23359955-23359994)
chr2 (188-219)||(44439350-44439381)
chr2 (188-245)||(30503303-30503360)
chr2 (177-214)||(42973014-42973051)
chr2 (182-222)||(4908880-4908920)
chr2 (189-245)||(22882875-22882931)
chr2 (182-226)||(33502324-33502368)
chr2 (182-222)||(38600468-38600508)
[»] chr5 (10 HSPs)
chr5 (183-235)||(27374236-27374288)
chr5 (183-222)||(22811075-22811114)
chr5 (196-239)||(39514933-39514976)
chr5 (119-149)||(12208955-12208985)
chr5 (211-245)||(34454048-34454082)
chr5 (184-221)||(24036623-24036660)
chr5 (185-222)||(43438619-43438656)
chr5 (187-219)||(7667751-7667783)
chr5 (119-147)||(13224732-13224760)
chr5 (182-222)||(14299416-14299456)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 50751462 - 50751054
Alignment:
Q  16 attatgagaaatggaagtggaagccattaggttgttccatcccaaggtgatgatgataacattaatttctcaaattgctacctttttattttcttataat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  50751462 attatgagaaatggaagtggaagccattaggttgttccatcccaaggtgatgatgataacattaatttctcacattgctacctttttgttttcttataat 50751363  T
Q  116 tgcataattgattttgacatgtttggatgttctctacaattgatttttagtcgacttttatgtaactgtattcaaacataaatcactttacatttaactc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50751362 tgcataattgattttgacatgtttggatgttctctacaattgatttttagtcgacttttatgtaactgtattcaaacataaatcattttacatttaactc 50751263  T
Q  216 acttttagtccgaatcaattcattcaaaataaccaaacacgcttaaatcatgctgcattttcaggtttgatgcactgaaatatcttggtaaaatgagagg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50751262 acttttagtccgaatcaattcattcaaaataaccaaacacgcttaaatcatgctgtattttcaggtttgatgcactgaaatatcttggtaaaatgagagg 50751163  T
Q  316 aaagagaatgatgttggtgggtgattctataatgagaaaccagtgggaatctcttgtatgcttagttcaaggagttattgctactgacaggaaaaaagtc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50751162 aaagagaatgatgttggtgggtgattctataatgagaaaccagtgggaatctcttgtatgcttagttcaaggagttattgcaactgacaggaaaaaagtc 50751063  T
Q  416 acctatgat 424  Q
    | |||||||    
T  50751062 atctatgat 50751054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 19413212 - 19413103
Alignment:
Q  278 aggtttgatgcactgaaatatcttggtaaaatgagaggaaagagaatgatgttggtgggtgattctataatgagaaaccagtgggaatctcttgtatgct 377  Q
    ||||||||||||||||| | |||||| ||||||||| | |||||||| ||||||||||||||||| ||||||||||| |||||||||||| | |||||||    
T  19413212 aggtttgatgcactgaagtttcttggaaaaatgagaaggaagagaataatgttggtgggtgattcaataatgagaaatcagtgggaatctttagtatgct 19413113  T
Q  378 tagttcaagg 387  Q
    |||| |||||    
T  19413112 tagtacaagg 19413103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 6932164 - 6932116
Alignment:
Q  197 atcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  6932164 atcattttacattcaactcacttttagtcagaatcaattcattcaaaat 6932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 5268311 - 5268362
Alignment:
Q  184 tattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    |||||||||| ||||||||||||||| ||||||||||||| | |||||||||    
T  5268311 tattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaatt 5268362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 28024546 - 28024601
Alignment:
Q  178 taactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaa 233  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||  |||||||    
T  28024546 taactgtatgtaaacaaaaatcactttacatttaactcacttttagtttgaatcaa 28024601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 5410697 - 5410758
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 243  Q
    ||||||||||||||||||| |||||||  |||||||||||| ||  ||||||||| ||||||    
T  5410697 tgtattcaaacataaatcaatttacatccaactcacttttaatcaaaatcaattctttcaaa 5410758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 7335944 - 7335907
Alignment:
Q  185 attcaaacataaatcactttacatttaactcactttta 222  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7335944 attcaaacataaatcactttacattcaactcactttta 7335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 4347033 - 4347072
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcactttta 222  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  4347033 gtatccaaacataaatcactttacattcaactcactttta 4347072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 40352455 - 40352489
Alignment:
Q  188 caaacataaatcactttacatttaactcactttta 222  Q
    |||||||||||||||||||||| ||||||||||||    
T  40352455 caaacataaatcactttacattaaactcactttta 40352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 47725199 - 47725165
Alignment:
Q  211 aactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||||||||||||| |||||||||||||||||||    
T  47725199 aactcacttttagtcagaatcaattcattcaaaat 47725165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 47732191 - 47732157
Alignment:
Q  211 aactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||||||||||||| |||||||||||||||||||    
T  47732191 aactcacttttagtcagaatcaattcattcaaaat 47732157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 47978419 - 47978366
Alignment:
Q  192 cataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||||||||||||||| ||||||||||||  |  |||||||||| |||||||    
T  47978419 cataaatcactttacattcaactcacttttacccaaaatcaattcactcaaaat 47978366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 27801714 - 27801666
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 236  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  27801714 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 27801666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 37724402 - 37724370
Alignment:
Q  184 tattcaaacataaatcactttacatttaactca 216  Q
    |||||||||||||||||||||||||| ||||||    
T  37724402 tattcaaacataaatcactttacattaaactca 37724370  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 45557455 - 45557518
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||| |||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  45557455 tgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaat 45557518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 29829364 - 29829305
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattca 241  Q
    ||||| |||||||||||||||||||||| |||||| |||||| | |||||||||||||||    
T  29829364 tgtatccaaacataaatcactttacattcaactcatttttagccagaatcaattcattca 29829305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 117861 - 117908
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    |||||| ||| ||||||||||||||||||||||||||| |||| ||||    
T  117861 caaacaaaaaccactttacatttaactcacttttagtcggaataaatt 117908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 38510415 - 38510377
Alignment:
Q  184 tattcaaacataaatcactttacatttaactcactttta 222  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  38510415 tattcaaacataaatcactttatattcaactcactttta 38510377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 40491668 - 40491721
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    ||||| |||| |||||||||||||| || |||||||||||||||  ||||||||    
T  40491668 tgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 44856780 - 44856735
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaa 233  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||    
T  44856780 caaacataaatcgctttacattcaactcacttttaggcagaatcaa 44856735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 48459752 - 48459805
Alignment:
Q  169 acttttatgtaactgtattcaaacataaatcactttacatttaactcactttta 222  Q
    ||||||| |||| ||||| ||||||||||||| || ||||| ||||||||||||    
T  48459752 acttttaagtaagtgtatccaaacataaatcaattcacattcaactcactttta 48459805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 4228603 - 4228655
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    |||| ||||||||||||||||| |||| |||||||||||| ||  ||||||||    
T  4228603 gtatccaaacataaatcacttttcattcaactcacttttaatcaaaatcaatt 4228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 7276053 - 7276085
Alignment:
Q  189 aaacataaatcactttacatttaactcactttt 221  Q
    |||||||||||||||||||||||| ||||||||    
T  7276053 aaacataaatcactttacatttaaatcactttt 7276085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 15311270 - 15311230
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcactttta 222  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  15311270 tgtatccaaacataaatcactatacattcaactcactttta 15311230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 23783202 - 23783234
Alignment:
Q  184 tattcaaacataaatcactttacatttaactca 216  Q
    |||||||||||||||| ||||||||||||||||    
T  23783202 tattcaaacataaatcgctttacatttaactca 23783234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 26975350 - 26975314
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcactt 219  Q
    |||||||||||||||||| |||||||| |||||||||    
T  26975350 gtattcaaacataaatcattttacattcaactcactt 26975314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 32187001 - 32187049
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 236  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  32187001 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 32187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 36920231 - 36920171
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 243  Q
    |||||||||||||||||| |||| || |||||||||||||  |  ||||||||| ||||||    
T  36920231 gtattcaaacataaatcaatttatatctaactcacttttaaccaaaatcaattctttcaaa 36920171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 41715718 - 41715766
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 236  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  41715718 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 41715766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 44967453 - 44967413
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcactttta 222  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  44967453 tgtattcaaacataaatcaattcacattcaactcactttta 44967413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 33843807 - 33843864
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||||| |||||||    
T  33843807 caaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaat 33843864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 21743139 - 21743088
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    ||||||||| ||||||||||||||| |||| |||||||||| |||||||||||    
T  21743139 gtattcaaatataaatcactttaca-ttaattcacttttagcccgaatcaatt 21743088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 36150629 - 36150676
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    |||||||||||||||||||||| |||||||||||| ||  ||||||||    
T  36150629 caaacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 55638815 - 55638782
Alignment:
Q  189 aaacataaatcactttacatttaactcactttta 222  Q
    |||||||||||| |||||||||||||||||||||    
T  55638815 aaacataaatcaatttacatttaactcactttta 55638782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 55648054 - 55647993
Alignment:
Q  184 tattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||||  |||| |||||||||||| || ||||||||||||  |||||||| |||||||||    
T  55648054 tattcaattataactcactttacattcaagtcacttttagtcataatcaattaattcaaaat 55647993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 17898117 - 17898085
Alignment:
Q  188 caaacataaatcactttacatttaactcacttt 220  Q
    |||||||||||||||||||||| ||||||||||    
T  17898117 caaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 20712809 - 20712749
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaa 242  Q
    ||||| |||||| |||| ||||||| || |||||| |||||||| ||||||||||| ||||    
T  20712809 tgtatccaaacacaaataactttaccttcaactcatttttagtcggaatcaattcactcaa 20712749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 48550242 - 48550290
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 236  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  48550242 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 48550290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 16972059 - 16972005
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattc 236  Q
    |||||||||||| |||||| ||||| || ||||||||||||||| ||||||||||    
T  16972059 tgtattcaaacacaaatcattttaccttcaactcacttttagtctgaatcaattc 16972005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 19649229 - 19649268
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcactttta 222  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  19649229 gtatccaaacataaatcactttacattcaactcactttta 19649268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 38875250 - 38875211
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcactttt 221  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  38875250 tgtatccaaacataaatcactttacattgaactcactttt 38875211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 11038125 - 11038155
Alignment:
Q  119 ataattgattttgacatgtttggatgttctc 149  Q
    |||||||||||||||||||||||||||||||    
T  11038125 ataattgattttgacatgtttggatgttctc 11038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 13929849 - 13929819
Alignment:
Q  119 ataattgattttgacatgtttggatgttctc 149  Q
    |||||||||||||||||||||||||||||||    
T  13929849 ataattgattttgacatgtttggatgttctc 13929819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 36779439 - 36779487
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 236  Q
    ||||||||||| |||||||||| |||||||||||| ||  |||||||||    
T  36779439 caaacataaattactttacattcaactcacttttaatcaaaatcaattc 36779487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 34911039 - 34911095
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||||||||||||| || || ||||||||||||||| ||||||||||| |||||||    
T  34911039 caaacataaatcactt-accttcaactcacttttagtcggaatcaattcactcaaaat 34911095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 28466985 - 28466916
Alignment:
Q  176 tgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||| ||||| |||||||||| |||| ||| || |||||| |||||| | ||||||||||| |||||||    
T  28466985 tgtaaatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaat 28466916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 34736748 - 34736817
Alignment:
Q  176 tgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||| ||||| |||||||||| |||| ||| || |||||| |||||| | ||||||||||| |||||||    
T  34736748 tgtaaatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaat 34736817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 19261023 - 19260995
Alignment:
Q  121 aattgattttgacatgtttggatgttctc 149  Q
    |||||||||||||||||||||||||||||    
T  19261023 aattgattttgacatgtttggatgttctc 19260995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 29409321 - 29409257
Alignment:
Q  179 aactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 243  Q
    |||||||| ||||||||||||| || ||||  |||||||||||| ||  ||||||||| ||||||    
T  29409321 aactgtatccaaacataaatcaattcacatcaaactcacttttaatcaaaatcaattctttcaaa 29409257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 34620963 - 34621039
Alignment:
Q  169 acttttatgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||||  ||| ||||| ||||||||||||||||||| || |||||| || ||| | ||||| ||||| |||||||    
T  34620963 acttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaat 34621039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 34748400 - 34748476
Alignment:
Q  169 acttttatgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||||  ||| ||||| ||||||||||||||||||| || |||||| || ||| | ||||| ||||| |||||||    
T  34748400 acttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaat 34748476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 3776612 - 3776669
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcatt 239  Q
    ||||| ||| |||||||||||||||||| |||||| |||||| | |||||||||||||    
T  3776612 tgtatccaagcataaatcactttacattcaactcaattttagccagaatcaattcatt 3776669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 37335029 - 37334976
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    |||||||| |||||||||||||||| || |||||| |||||||| |||||||||    
T  37335029 tgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaatt 37334976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 7012675 - 7012714
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcactttta 222  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  7012675 gtatccaaacataaatcactttacattcaactcactttta 7012714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 31084241 - 31084304
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||| ||||||||||||| || ||||| |||||||||||| ||  ||||||||| ||||||||    
T  31084241 tgtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctttcaaaat 31084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 35132262 - 35132231
Alignment:
Q  189 aaacataaatcactttacatttaactcacttt 220  Q
    ||||||||||||||||||||||||||||||||    
T  35132262 aaacataaatcactttacatttaactcacttt 35132231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 44225600 - 44225639
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcactttta 222  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  44225600 gtatccaaacataaatcactttacattaaactcactttta 44225639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 10852774 - 10852740
Alignment:
Q  188 caaacataaatcactttacatttaactcactttta 222  Q
    |||||||||||||||||||||| ||||||||||||    
T  10852774 caaacataaatcactttacattcaactcactttta 10852740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 23918882 - 23918916
Alignment:
Q  188 caaacataaatcactttacatttaactcactttta 222  Q
    |||||||||||||||||||||| ||||||||||||    
T  23918882 caaacataaatcactttacattcaactcactttta 23918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 24916581 - 24916627
Alignment:
Q  189 aaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    |||||||||||| |||||||| ||||||||||||| | |||||||||    
T  24916581 aaacataaatcattttacattcaactcacttttagcctgaatcaatt 24916627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 42644302 - 42644336
Alignment:
Q  188 caaacataaatcactttacatttaactcactttta 222  Q
    |||||||||||||||||||||| ||||||||||||    
T  42644302 caaacataaatcactttacattcaactcactttta 42644336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 29252186 - 29252129
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||||||||||| |||||| |||||||||||||  ||  |||||||||| |||||||    
T  29252186 caaacataaatcaatttacaattaactcacttttgatcaaaatcaattcaatcaaaat 29252129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 35951128 - 35951180
Alignment:
Q  189 aaacataaatcactttacatttaactcacttttagtccgaatcaattcattca 241  Q
    ||||||||||| ||||||||| || |||  ||||||| |||||||||||||||    
T  35951128 aaacataaatccctttacattcaattcaactttagtcggaatcaattcattca 35951180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 4119422 - 4119381
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttag 223  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  4119422 tgtattcaaacataaatcactttacattagactcacttttag 4119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 10918652 - 10918709
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||||||||||||||||||| ||||||||||||  |  |||||||||| |||||||    
T  10918652 caaacataaatcactttacattcaactcacttttatccaaaatcaattcagtcaaaat 10918709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 15220856 - 15220804
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaat 234  Q
    ||||| |||||||||||||||||||||| ||||||||||| |||  |||||||    
T  15220856 tgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaat 15220804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 3853943 - 3854006
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||| ||||||||||||| |||||||| |||||||||||| ||  |||||||||  |||||||    
T  3853943 tgtatccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaat 3854006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 23359994 - 23359955
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcactttta 222  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  23359994 gtatccaaacataaatcactttacattcaactcactttta 23359955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 44439350 - 44439381
Alignment:
Q  188 caaacataaatcactttacatttaactcactt 219  Q
    ||||||||||||||||||||||||||||||||    
T  44439350 caaacataaatcactttacatttaactcactt 44439381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 30503303 - 30503360
Alignment:
Q  188 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    |||||| |||||| ||||| || |||| |||||||||| ||||||||||| |||||||    
T  30503303 caaacaaaaatcagtttaccttcaactaacttttagtcagaatcaattcactcaaaat 30503360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 42973014 - 42973051
Alignment:
Q  177 gtaactgtattcaaacataaatcactttacatttaact 214  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  42973014 gtaaatgtattcaaacataaattactttacatttaact 42973051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 4908880 - 4908920
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcactttta 222  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  4908880 tgtatccaaacataaatcactttacatgaaactcactttta 4908920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 22882875 - 22882931
Alignment:
Q  189 aaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||||||||||||| |||||||||| | |||||  | ||||||||| |||||||||    
T  22882875 aaacataaatcacttaacatttaacttatttttatcctgaatcaatttattcaaaat 22882931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 33502324 - 33502368
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcacttttagtcc 226  Q
    ||||| |||||| ||||||||||||||| |||| |||||||||||    
T  33502324 tgtatccaaacacaaatcactttacattcaacttacttttagtcc 33502368  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 38600508 - 38600468
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcactttta 222  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  38600508 tgtattcaaacataaatcaatttacatcaaactcactttta 38600468  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 27374288 - 27374236
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 235  Q
    |||||||| || |||||||||||| ||||||| |||||||||| |||||||||    
T  27374288 gtattcaatcacaaatcactttacttttaacttacttttagtcggaatcaatt 27374236  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 22811075 - 22811114
Alignment:
Q  183 gtattcaaacataaatcactttacatttaactcactttta 222  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  22811075 gtatccaaacataaatcactttacattcaactcactttta 22811114  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 39514933 - 39514976
Alignment:
Q  196 aatcactttacatttaactcacttttagtccgaatcaattcatt 239  Q
    ||||||||||||||||||||| |||||| | |||||||||||||    
T  39514933 aatcactttacatttaactcaattttagccagaatcaattcatt 39514976  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 12208985 - 12208955
Alignment:
Q  119 ataattgattttgacatgtttggatgttctc 149  Q
    |||||||||||||||||||||||||||||||    
T  12208985 ataattgattttgacatgtttggatgttctc 12208955  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 34454082 - 34454048
Alignment:
Q  211 aactcacttttagtccgaatcaattcattcaaaat 245  Q
    ||||||||||||||| |||||||||||||||||||    
T  34454082 aactcacttttagtcagaatcaattcattcaaaat 34454048  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 24036623 - 24036660
Alignment:
Q  184 tattcaaacataaatcactttacatttaactcactttt 221  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  24036623 tattcaaacataaatcattttacattcaactcactttt 24036660  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 43438656 - 43438619
Alignment:
Q  185 attcaaacataaatcactttacatttaactcactttta 222  Q
    ||||||||||| || |||||||||||||||||||||||    
T  43438656 attcaaacatagataactttacatttaactcactttta 43438619  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 7667751 - 7667783
Alignment:
Q  187 tcaaacataaatcactttacatttaactcactt 219  Q
    ||||||||||||||||||||||| |||||||||    
T  7667751 tcaaacataaatcactttacattcaactcactt 7667783  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 13224760 - 13224732
Alignment:
Q  119 ataattgattttgacatgtttggatgttc 147  Q
    |||||||||||||||||||||||||||||    
T  13224760 ataattgattttgacatgtttggatgttc 13224732  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 14299416 - 14299456
Alignment:
Q  182 tgtattcaaacataaatcactttacatttaactcactttta 222  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  14299416 tgtattcaaacacaaatcactttaccttcaactcactttta 14299456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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