View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19405_low_26 (Length: 242)

Name: NF19405_low_26
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19405_low_26
NF19405_low_26
[»] chr1 (7 HSPs)
chr1 (128-228)||(28241670-28241770)
chr1 (104-136)||(43954365-43954397)
chr1 (103-136)||(40920610-40920643)
chr1 (104-136)||(6025774-6025806)
chr1 (104-132)||(6299478-6299506)
chr1 (104-136)||(8342962-8342994)
chr1 (104-136)||(30834058-30834090)
[»] scaffold0373 (1 HSPs)
scaffold0373 (104-136)||(2382-2414)
[»] chr4 (4 HSPs)
chr4 (104-136)||(6843784-6843816)
chr4 (104-136)||(7544604-7544636)
chr4 (104-136)||(41192230-41192262)
chr4 (104-136)||(50662557-50662589)
[»] chr2 (3 HSPs)
chr2 (104-136)||(12026086-12026118)
chr2 (104-136)||(32402669-32402701)
chr2 (104-136)||(42582519-42582551)
[»] chr8 (4 HSPs)
chr8 (85-136)||(37826437-37826488)
chr8 (104-136)||(10079988-10080020)
chr8 (104-136)||(38483050-38483082)
chr8 (104-136)||(39388952-39388984)
[»] chr3 (2 HSPs)
chr3 (85-136)||(11284138-11284189)
chr3 (107-136)||(46140579-46140608)
[»] chr7 (3 HSPs)
chr7 (104-136)||(29653627-29653659)
chr7 (104-136)||(30200045-30200077)
chr7 (104-136)||(40139029-40139061)
[»] chr6 (1 HSPs)
chr6 (104-136)||(35199703-35199735)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 28241770 - 28241670
Alignment:
Q  128 atagaaatacaatattgttcatgataaaatattatgatgtcgtttgatctatt-agccgacaccacttagtatcccacacttagtcattggtatgtaaca 226  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28241770 atagaaatacaatattgttcatgataaaataatat-atgtcgtttgatctatttagccgacaccacttagtatcccacacttagtcattggtatgtaaca 28241672  T
Q  227 tt 228  Q
    ||    
T  28241671 tt 28241670  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 43954365 - 43954397
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||||||||||||||    
T  43954365 aagatctagagattaatgagtttgatagaaata 43954397  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 40920643 - 40920610
Alignment:
Q  103 taagatctagagattaatgagtttgatagaaata 136  Q
    ||||||||||||||||||||||| ||||||||||    
T  40920643 taagatctagagattaatgagttggatagaaata 40920610  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 6025774 - 6025806
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  6025774 aagatctagagattaatgagttggatagaaata 6025806  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 6299506 - 6299478
Alignment:
Q  104 aagatctagagattaatgagtttgataga 132  Q
    |||||||||||||||||||||||||||||    
T  6299506 aagatctagagattaatgagtttgataga 6299478  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 8342994 - 8342962
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  8342994 aagatctagagattaatgagttggatagaaata 8342962  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 30834090 - 30834058
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  30834090 aagatctagagattaatgagttggatagaaata 30834058  T

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Target: scaffold0373 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 2414 - 2382
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||||||||||||||    
T  2414 aagatctagagattaatgagtttgatagaaata 2382  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 6843784 - 6843816
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||||||||||||||    
T  6843784 aagatctagagattaatgagtttgatagaaata 6843816  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 7544636 - 7544604
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||||||| ||||||    
T  7544636 aagatctagagattaatgagtttgatcgaaata 7544604  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 41192230 - 41192262
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  41192230 aagatctagagattaatgagttggatagaaata 41192262  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 50662557 - 50662589
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||||||| ||||||    
T  50662557 aagatctagagattaatgagtttgatcgaaata 50662589  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 12026118 - 12026086
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||||||||||||||    
T  12026118 aagatctagagattaatgagtttgatagaaata 12026086  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 32402669 - 32402701
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  32402669 aagatctagagattaatgagttggatagaaata 32402701  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 42582551 - 42582519
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    ||||| |||||||||||||||||||||||||||    
T  42582551 aagatgtagagattaatgagtttgatagaaata 42582519  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 37826437 - 37826488
Alignment:
Q  85 aactataagataaattattaagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||| ||| |||||||||||||||||||  ||||| ||||||||||    
T  37826437 aactataagagaaactattaagatctagagattagcgagttggatagaaata 37826488  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 10080020 - 10079988
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  10080020 aagatctagagattaatgagttggatagaaata 10079988  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 38483082 - 38483050
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  38483082 aagatctagagattaatgagttggatagaaata 38483050  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 39388952 - 39388984
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  39388952 aagatctagagattaatgagttggatagaaata 39388984  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 11284138 - 11284189
Alignment:
Q  85 aactataagataaattattaagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||| ||| ||||||||| |||||||||||||||| |||| |||||    
T  11284138 aactataagagaaactattaagatgtagagattaatgagttggatataaata 11284189  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 46140579 - 46140608
Alignment:
Q  107 atctagagattaatgagtttgatagaaata 136  Q
    ||||||||||||||||||||||||||||||    
T  46140579 atctagagattaatgagtttgatagaaata 46140608  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 29653659 - 29653627
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  29653659 aagatctagagattaatgagttagatagaaata 29653627  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 30200077 - 30200045
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    ||||||||||||||||||||||||||| |||||    
T  30200077 aagatctagagattaatgagtttgatataaata 30200045  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 40139061 - 40139029
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||| ||||||||||||||    
T  40139061 aagatctagagattaatgcgtttgatagaaata 40139029  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 35199735 - 35199703
Alignment:
Q  104 aagatctagagattaatgagtttgatagaaata 136  Q
    |||||||||||||||||||||| ||||||||||    
T  35199735 aagatctagagattaatgagttagatagaaata 35199703  T

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