View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19405_low_29 (Length: 224)

Name: NF19405_low_29
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19405_low_29
NF19405_low_29
[»] chr1 (3 HSPs)
chr1 (1-224)||(12637012-12637235)
chr1 (1-218)||(15885731-15885951)
chr1 (5-218)||(12609920-12610136)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-216)||(62164-62382)
[»] chr3 (12 HSPs)
chr3 (1-135)||(23036181-23036315)
chr3 (1-102)||(23145931-23146032)
chr3 (1-216)||(23039052-23039270)
chr3 (1-102)||(23140057-23140158)
chr3 (1-102)||(23148769-23148870)
chr3 (1-133)||(23024283-23024415)
chr3 (5-180)||(22971966-22972141)
chr3 (1-102)||(23017073-23017174)
chr3 (5-180)||(22946419-22946594)
chr3 (71-186)||(23032780-23032895)
chr3 (5-63)||(23032729-23032787)
chr3 (5-70)||(22986292-22986357)
[»] scaffold0554 (1 HSPs)
scaffold0554 (1-135)||(6609-6743)
[»] chr6 (1 HSPs)
chr6 (5-102)||(21779828-21779925)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12637012 - 12637235
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637012 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 12637111  T
Q  101 ctaccaattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaagtaaaagaggag 200  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637112 ctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaagtaaaagaggag 12637211  T
Q  201 ttggagggtgtaaccttagagtct 224  Q
    ||||||||||||||||||||||||    
T  12637212 ttggagggtgtaaccttagagtct 12637235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15885951 - 15885731
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  15885951 aaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatct 15885852  T
Q  101 ctaccaattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagag 197  Q
    || ||||| | |||||| || ||| ||||||| ||||||| |||||||||||| || ||||| |||||||||||| ||||||||||   |||||||||||    
T  15885851 cttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaagag 15885752  T
Q  198 gagttggagggtgtaacctta 218  Q
    ||| |||||||||||||||||    
T  15885751 gagctggagggtgtaacctta 15885731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 12609920 - 12610136
Alignment:
Q  5 ggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctac 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |    
T  12609920 ggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttggatctcttc 12610019  T
Q  105 caattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagt 201  Q
    |||| | |||||| || ||| ||||||| ||||||  ||||||| ||||||| ||||| |||||||||||||||||||||||   |||||||||||||      
T  12610020 caatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacc 12610119  T
Q  202 tggagggtgtaacctta 218  Q
    |||||| ||||||||||    
T  12610120 tggaggatgtaacctta 12610136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 62164 - 62382
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    ||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  62164 aaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatct 62263  T
Q  101 ctaccaattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagag 197  Q
    || || |||| |||||| || ||| ||| |||  ||||   ||||||||||||||| ||||| |||||||||| || |||||||||   |||||||||||    
T  62264 cttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttggaagtaaaagag 62363  T
Q  198 gagttggagggtgtaacct 216  Q
     |  ||| |||||||||||    
T  62364 cacctggggggtgtaacct 62382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23036181 - 23036315
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    |||||||||||||||||| ||| | |||||||||||||||| |||  | ||||||||||| |||| ||| |||||||||||||||||||| |||||||||    
T  23036181 aaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttggatct 23036280  T
Q  101 ctaccaattgtccatgcgtttactgtcaccttact 135  Q
    ||  |||||| ||| || |||| ||| ||||||||    
T  23036281 cttgcaattgcccaagcatttattgttaccttact 23036315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23145931 - 23146032
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    |||||||||||||||||| ||| | ||||| |||||||||  |||  | |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  23145931 aaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtttggatct 23146030  T
Q  101 ct 102  Q
    ||    
T  23146031 ct 23146032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23039052 - 23039270
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    |||||||||||||||| ||||| ||||||| |||||||| | |||  ||| |||||||||||||| ||| ||||| || ||||||||||| |||||||||    
T  23039052 aaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatttggatct 23039151  T
Q  101 ctaccaattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaagag 197  Q
    ||  |||||| ||| || || ||| |||||||||| ||    ||||| ||||| || |  || ||||||| ||| | |||||||||    || |||||||    
T  23039152 cttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggcagcaaaagag 23039251  T
Q  198 gagttggagggtgtaacct 216  Q
    | |||||||||||||||||    
T  23039252 gtgttggagggtgtaacct 23039270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23140057 - 23140158
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    |||||||||||||||||||| | | ||||| |||||||||| | | || |||||||||||||||| |||  ||||||||||||||||||| |||||||||    
T  23140057 aaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttggatct 23140156  T
Q  101 ct 102  Q
    ||    
T  23140157 ct 23140158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23148769 - 23148870
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    ||||||||||||||| || ||| | ||||| |||||||||  |||  |||||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  23148769 aaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtttgaatct 23148868  T
Q  101 ct 102  Q
    ||    
T  23148869 ct 23148870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 23024283 - 23024415
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    ||||||||| |||||||| ||| | ||||| |||||||||   ||| | |||||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  23024283 aaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttggatct 23024382  T
Q  101 ctaccaattgtccatgcgtttactgtcacctta 133  Q
    ||  |||||| ||| || || ||| ||||||||    
T  23024383 cttgcaattgcccaagcattgactatcacctta 23024415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 22971966 - 22972141
Alignment:
Q  5 ggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctac 104  Q
    |||||||||||||||||  |||||||| | |||| ||| ||| |||| ||||| || |||| |||| | ||||| |||||||| || |||||||| || |    
T  22971966 ggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttc 22972065  T
Q  105 caattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccaca 180  Q
    |||||| ||| || || | | ||||| ||||||||  |||||| ||||| || ||||| ||||| |||||||||||    
T  22972066 caattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttgtccaca 22972141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23017073 - 23017174
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    |||||||||||| || || ||| | ||||| |||||||||  | |  |||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  23017073 aaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttggatct 23017172  T
Q  101 ct 102  Q
    ||    
T  23017173 ct 23017174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 22946419 - 22946594
Alignment:
Q  5 ggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctac 104  Q
    |||||||||||||||||  |||||||| | |||| ||| ||| |||| ||||| || |||| |||| | ||||| |||||||| || |||||||| || |    
T  22946419 ggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttc 22946518  T
Q  105 caattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccaca 180  Q
    |||||| ||| || || | | ||||| |||| |||  |||||| ||||| || ||||| |||||||||||| ||||    
T  22946519 caattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgcttgtgcaca 22946594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 23032780 - 23032895
Alignment:
Q  71 ctctctggttcagtccagtactttggatctctaccaattgtccatgcgtttactgtcaccttacttttggctggtatatgatacccttcaatttcacatg 170  Q
    |||||||||||||||||||| |||||||||||  |||||| ||| || || ||| |||||||||||||   |||||| ||||| || |  || |||||||    
T  23032780 ctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatg 23032879  T
Q  171 cttgtccacattctct 186  Q
    |||| || ||||||||    
T  23032880 cttgaccgcattctct 23032895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 23032729 - 23032787
Alignment:
Q  5 ggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctgg 63  Q
    |||||||||||||||||| ||||||| |||||||||| |||  | ||||||||||||||    
T  23032729 ggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctctgg 23032787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 22986292 - 22986357
Alignment:
Q  5 ggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaac 70  Q
    |||||||||||||||||| |||||||| | |||||||| ||| |||| || ||||| |||| ||||    
T  22986292 ggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaac 22986357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6743 - 6609
Alignment:
Q  1 aaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatct 100  Q
    ||||||||||||||||||||||   ||||| |||||||||| |||  || ||||||||||||||| |||||||||||||||||||||| | |||||||||    
T  6743 aaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatct 6644  T
Q  101 ctaccaattgtccatgcgtttactgtcaccttact 135  Q
    ||  |||||| ||| || || | | ||||||||||    
T  6643 cttgcaattgcccaagcattgattatcaccttact 6609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 21779828 - 21779925
Alignment:
Q  5 ggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctct 102  Q
    |||||||||||||||||| | |||||  ||||||||  |||| | |||||||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  21779828 ggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctct 21779925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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