View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_low_4 (Length: 399)
Name: NF19405_low_4
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 9629774 - 9629402
Alignment:
| Q |
18 |
acacaaagcatcttttctctactgatcatttctgaaacaccagggatgtatatcataacatcattctggcattgtatgtatttggtgaaaaaatcaatgt |
117 |
Q |
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| T |
9629774 |
acacaaagcatcttttctctactgatcatttctgaaacaccagggatgtatatcataacatcattctggcattgtatgtatttggtgaaaaaatgaatgt |
9629675 |
T |
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| Q |
118 |
atggtccaatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatttatgttttcaatttcggtccattaa |
217 |
Q |
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| T |
9629674 |
atggtccaatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatttatgttttcaattttggtccattaa |
9629575 |
T |
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| Q |
218 |
taattaattatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacattttat |
317 |
Q |
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| T |
9629574 |
taattaattatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacattttat |
9629475 |
T |
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| Q |
318 |
taagataggttattaccatctagagacaagatcaagaatcagtgaatatctcttttctttttatgtctcacag |
390 |
Q |
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| T |
9629474 |
taagaaaggttattaccatctagagacaagatcaagaatcaatgaatatctcttttctttttatgtctcacag |
9629402 |
T |
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Back To:
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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 41258571 - 41258637
Alignment:
| Q |
247 |
ttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacatt |
313 |
Q |
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| T |
41258571 |
ttatatagattggaattgaatgccaactgagtgctgaagaacttgctcaacaaatccagcaaacatt |
41258637 |
T |
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