View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_low_7 (Length: 373)
Name: NF19405_low_7
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 2385703 - 2385349
Alignment:
| Q |
5 |
tctctagagggatgattattttctatatttgaatactgttctgtgaagagtattaatgcatgacaagcaagttcgaaactcatgcctataggatgatgcg |
104 |
Q |
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| T |
2385703 |
tctctggagggctgatcattttctatatttgaatactgttatgtgaagagtattaatgcatgacaagcaaggtggaaactaatgcctataggatgattcg |
2385604 |
T |
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| Q |
105 |
gcaagatcaaattaacgaaatgattacataatcggaaacaatctgtcttgaatattttactttagtatactacacatcttacaactatattatctttcta |
204 |
Q |
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| T |
2385603 |
gcaagatcaaattgacgaaatgattacttaatcggaaacaagctgtcttgaatattttactttcgtatactacg-atcttacaactatattatccttcta |
2385505 |
T |
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| Q |
205 |
tgtat----aaaccttattgctttttgaaaatttcaggtaaaagaggagaggacagggtggctttagattagaatactcgaatcaaactagctttaggtg |
300 |
Q |
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| T |
2385504 |
tgtatgtataaaccttattgctttttgaaaatttcaggtaaaagaggagaggacagggtggctttagattggaatactcggatcaaactagctttaggtg |
2385405 |
T |
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| Q |
301 |
ctgcacgaggccttgctcgtatccattccgaaaatggtggaaaacttgtacatggc |
356 |
Q |
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| T |
2385404 |
ctgcacgaggccttgctcatatccattccaaaaatggtggaaaacttgtacatggc |
2385349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 356
Target Start/End: Original strand, 41730851 - 41730989
Alignment:
| Q |
218 |
ttgctttttgaaaatttcaggtaaaagaggagaggacagggtggctttagattagaatactcgaatcaaactagctttaggtgctgcacgaggccttgct |
317 |
Q |
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| T |
41730851 |
ttgctttatgagaatttcagggaaaagaggagaggacaaggtgccattagattgggatactcggttgagaatagctttaggtgcagcaagaggcattgct |
41730950 |
T |
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| Q |
318 |
cgtatccattccgaaaatggtggaaaacttgtacatggc |
356 |
Q |
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| T |
41730951 |
caaatccatgtcgagaatggcggtaaacttgtccatggc |
41730989 |
T |
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