View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19405_low_8 (Length: 370)
Name: NF19405_low_8
Description: NF19405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19405_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 25952337 - 25951984
Alignment:
| Q |
1 |
atgggactagcctatttatatagaagtagggattttgtcaaatggacccgagccaaacacccgattcactcggctaaaaccacaggtatgtgggagtgtc |
100 |
Q |
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| T |
25952337 |
atgggactagcctatttatatagaagtagggattttgtcaaatggacccgagccaaacacccgattcactcggctaaaaccactgggatgtgggagtgtc |
25952238 |
T |
|
| Q |
101 |
cggatttttacccggtttctttggaagggaaaaacgggttagacgcatcgacgataggtaatagtgttaaacatgtgctaaagaatagccttgacatgac |
200 |
Q |
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| T |
25952237 |
cggatttttacccggtttctttggaagggaaaaacgggttagacgcatcgacgataggtaatagtgttaaacatgtgctaaagaatagccttgacatgac |
25952138 |
T |
|
| Q |
201 |
gaggtatgaatactatacagttggaacgtatatccaaaataaggataagtatataccggataaaacttccgaggatggttggagtggccttagatatgat |
300 |
Q |
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| T |
25952137 |
gaggtatgaatactatacagttggaacgtatatccaaaataaggataagtatataccggataaaacttccgaggatggttggggtggccttagatatgat |
25952038 |
T |
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| Q |
301 |
tatggcaacttctatgcttccaaatcattctttgatccaagcaagagtagaagg |
354 |
Q |
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| T |
25952037 |
tatggcaacttctatgcttccaaatcattctttgatccaagcaagagtagaagg |
25951984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 42590775 - 42591111
Alignment:
| Q |
10 |
gcctatttatatagaagtagggattttgtcaaatggacccgagccaaacacccgattcactcggctaaaaccacaggtatgtgggagtgtccggattttt |
109 |
Q |
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| T |
42590775 |
gcctacttgtataggagtagggattttgtgaaatgggttcgggccaaacacccgatccattcaaaaactactacgggtatgtgggagtgtcctgattttt |
42590874 |
T |
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| Q |
110 |
acccggtttctttggaagggaaaaacgggttagacgcatcgacgataggtaatagtgttaaacatgtgctaaagaatagccttgacatgacgaggtatga |
209 |
Q |
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|||||||||| | |||| ||| ||||| || |||| | ||||||| |||||| ||||| |||||||||| ||||||||||| || | ||| |
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| T |
42590875 |
acccggtttcacttaaaggtaaagtagggttggatacatcaattgaaggtaatcatgttaagcatgtcttaaagaatagtcttgacatgactagatttga |
42590974 |
T |
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| Q |
210 |
atactatacagttggaacgtatatccaaaataaggataagtatataccggataaaacttccgaggatggttggagtggccttagatatgattatggcaac |
309 |
Q |
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| T |
42590975 |
gtactacacattgggcacatatttaactgataaggataagtatattccaagtaatacttcagaggatggttggggtggacttagatatgactatggtaat |
42591074 |
T |
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| Q |
310 |
ttctatgcttccaaatcattctttgatccaagcaaga |
346 |
Q |
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|||||||||||||| ||||| ||||||| ||| |||| |
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| T |
42591075 |
ttctatgcttccaagtcattttttgatcaaagtaaga |
42591111 |
T |
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