View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19406_high_13 (Length: 387)

Name: NF19406_high_13
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19406_high_13
NF19406_high_13
[»] chr7 (9 HSPs)
chr7 (76-369)||(11698669-11698962)
chr7 (91-370)||(3301935-3302225)
chr7 (150-370)||(39020519-39020729)
chr7 (56-267)||(29550068-29550266)
chr7 (91-370)||(1778086-1778378)
chr7 (175-222)||(47588737-47588784)
chr7 (176-277)||(5893195-5893297)
chr7 (175-227)||(36933946-36933998)
chr7 (91-119)||(39020785-39020813)
[»] chr5 (17 HSPs)
chr5 (91-371)||(1157545-1157824)
chr5 (56-270)||(6989309-6989523)
chr5 (56-367)||(7767355-7767678)
chr5 (91-372)||(41355828-41356117)
chr5 (91-371)||(18696516-18696805)
chr5 (92-238)||(21600705-21600850)
chr5 (131-257)||(38958579-38958705)
chr5 (56-372)||(27170433-27170761)
chr5 (151-340)||(7271392-7271577)
chr5 (54-275)||(6030744-6030975)
chr5 (151-278)||(26656310-26656436)
chr5 (151-278)||(26927897-26928023)
chr5 (62-225)||(1377706-1377881)
chr5 (151-227)||(25444511-25444588)
chr5 (144-277)||(27632472-27632607)
chr5 (157-277)||(36608145-36608267)
chr5 (91-152)||(7270163-7270224)
[»] chr2 (8 HSPs)
chr2 (62-372)||(3921083-3921393)
chr2 (91-372)||(1894922-1895203)
chr2 (56-372)||(1551909-1552226)
chr2 (56-372)||(17282280-17282577)
chr2 (56-259)||(17374786-17375000)
chr2 (56-342)||(4869102-4869398)
chr2 (151-275)||(34659832-34659955)
chr2 (175-223)||(3257982-3258030)
[»] chr4 (14 HSPs)
chr4 (56-372)||(53201735-53202053)
chr4 (56-372)||(34227316-34227632)
chr4 (91-372)||(47518774-47519052)
chr4 (173-372)||(23054593-23054793)
chr4 (151-342)||(6409594-6409786)
chr4 (91-208)||(31360549-31360666)
chr4 (56-238)||(14566436-14566630)
chr4 (177-370)||(24957913-24958107)
chr4 (175-224)||(14791946-14791995)
chr4 (182-282)||(50589289-50589390)
chr4 (97-155)||(23054823-23054881)
chr4 (144-227)||(12887961-12888045)
chr4 (182-282)||(23533066-23533167)
chr4 (182-226)||(28149606-28149650)
[»] chr6 (6 HSPs)
chr6 (56-372)||(20740078-20740402)
chr6 (151-370)||(21880996-21881214)
chr6 (95-370)||(34213716-34213996)
chr6 (56-278)||(3523971-3524206)
chr6 (176-227)||(22696255-22696306)
chr6 (173-226)||(34503274-34503327)
[»] chr1 (6 HSPs)
chr1 (104-372)||(34117577-34117845)
chr1 (91-232)||(25791142-25791283)
chr1 (151-369)||(34654516-34654735)
chr1 (91-342)||(615249-615511)
chr1 (95-280)||(39709413-39709611)
chr1 (144-227)||(32947228-32947312)
[»] chr8 (4 HSPs)
chr8 (56-370)||(10408297-10408623)
chr8 (151-370)||(5994189-5994407)
chr8 (56-278)||(20860768-20861009)
chr8 (151-283)||(6443596-6443728)
[»] chr3 (7 HSPs)
chr3 (91-370)||(43275457-43275738)
chr3 (151-275)||(18270131-18270254)
chr3 (55-224)||(893410-893591)
chr3 (175-282)||(25498548-25498656)
chr3 (152-227)||(17113970-17114046)
chr3 (91-151)||(18270266-18270326)
chr3 (176-228)||(27741608-27741659)
[»] scaffold0005 (2 HSPs)
scaffold0005 (56-238)||(250745-250939)
scaffold0005 (175-224)||(47736-47785)
[»] scaffold0009 (1 HSPs)
scaffold0009 (151-227)||(54040-54117)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 76 - 369
Target Start/End: Complemental strand, 11698962 - 11698669
Alignment:
Q  76 aaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaac 175  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||  ||||| |||| |||| ||||||||||||||||||| |||||||||||||||||    
T  11698962 aaagggccatctccgaaatcaataaatagaaacaccaaaacaatgcgaacacctcgagcaacgaaacaacataaacaaaatcatcaagcatcgtcacaac 11698863  T
Q  176 tgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaa 275  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  11698862 tgccacaaaaacaacttctaccacccacattctgctgctcgcacacaacccctgaacaccagcttaaaaacctacaccacaaccaacaacctttggaaaa 11698763  T
Q  276 cagccggg-nnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaa 369  Q
    ||||||||         | |||||||||||||||||| | ||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  11698762 cagccgggaaaaaaaaccccaaacacaaccattagctctcctaagcaccttca-cccaaacacaccttataaacaatcgcaaaagccaaccaaaa 11698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 91 - 370
Target Start/End: Original strand, 3301935 - 3302225
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaaca------------aaatcctcaagcatcgtcacaactgc 178  Q
    |||||||||||||||||||||||||||| | ||||||  |||||||| ||||||||||||||            |||||||||| ||| |||||||||||    
T  3301935 aaatcaataaatagaaacaccaaaacaaagctaacaccacgatcaacgaaacaacataaacataagttgtaccaaaatcctcaaacatggtcacaactgc 3302034  T
Q  179 cacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacag 278  Q
    |||||||| |||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||  ||||||     
T  3302035 cacaaaaataacttccaccacccacattccgctgctcacacacaccccctgaacaccaacttaaaaacctacacaacaaccaacaaccttt-aaaaacac 3302133  T
Q  279 ccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaa 370  Q
     ||||        ||||||||| |||||||||| | | || ||||||||  |||||||||| ||| | | || |||| ||||||||||||||    
T  3302134 tcgggaacaaaatctcaaacaccaccattagctctcccaaacaccttcacacaaaacacacttcacagagaaccgcagaagccaaccaaaaa 3302225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 370
Target Start/End: Complemental strand, 39020729 - 39020519
Alignment:
Q  150 acaaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaaccta 249  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||          || ||| ||||||||||||||||||||| |||||||||||    
T  39020729 acaaaatcctcaaacattgtcacaactgccacaaaaacaacttccaccac----------ttactcacacacaacccctgaacaccaaattaaaaaccta 39020640  T
Q  250 caccacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaaca 349  Q
    ||| |||||||||||| |||| ||||||| ||||        | ||||||| |||||||||| | | ||||||| ||| || |||||||||||||||| |    
T  39020639 cacaacaaccaacaacctttgaaaaacagtcgggaatacaaccccaaacaccaccattagctctcccaagcaccctcaccctaaacacacctcataaaga 39020540  T
Q  350 atcgcaaaagccaaccaaaaa 370  Q
    | |||||||| ||||||||||    
T  39020539 accgcaaaagtcaaccaaaaa 39020519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 267
Target Start/End: Original strand, 29550068 - 29550266
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||| ||||||||| | | ||||||  |||||  ||||||||||||||||||||||||| || | ||||||  |||||||| ||||||||||||||||     
T  29550068 tatagaaaacgcctcataacaaagggctatctccgaaatcaataaatagaaacaccaaaataaagctaacaccacgatcaacgaaacaacataaacaaac 29550167  T
Q  156 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccac 255  Q
    |           ||||  ||| ||||||||||||||| ||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||| | |     
T  29550168 t-----------gtca--actaccacaaaaacaacttttaccatccacattccgctgctcgcacacaacccttgaacatcaacttaaaaacctacccaat 29550254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 370
Target Start/End: Original strand, 1778086 - 1778378
Alignment:
Q  91 aaatcaataaatagaaacaccaaaa-caatgttaacacttcgatcaacaaaacaacataaacaaa------------atcctcaagcatcgtcacaactg 177  Q
    ||||||||||||||||||||||||| ||| |||| |||  |||||||| ||||||||||||||||            |||||||| ||| ||||||||||    
T  1778086 aaatcaataaatagaaacaccaaaaacaaagttatcaccacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacattgtcacaactg 1778185  T
Q  178 ccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaaca 277  Q
    |||||||||||||||| |||||| |||| ||  | || | |||||||||| |||||  ||| |||||| |||||| |||||||||||| |||| |||||     
T  1778186 ccacaaaaacaacttccaccacctacataccactactggtacacaacccccgaacaataacgtaaaaatctacacaacaaccaacaacctttgaaaaact 1778285  T
Q  278 gccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaa 370  Q
    | ||||        | ||||||  |||||||||  | | || ||||||||||||| |||||||||  ||| || |||||||||||| ||||||    
T  1778286 gtcgggaataaaaccccaaacatcaccattagccctcccaaacaccttcatccaacacacacctcccaaagaaccgcaaaagccaaacaaaaa 1778378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 47588737 - 47588784
Alignment:
Q  175 ctgccacaaaaacaacttctaccacccacattccgttgctcgcacaca 222  Q
    ||||||||||||||||||| |||||| |||||| | ||||||||||||    
T  47588737 ctgccacaaaaacaacttccaccacctacattctgctgctcgcacaca 47588784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 5893297 - 5893195
Alignment:
Q  176 tgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaac-ttaaaaacctacaccacaaccaacaacttttggaaa 274  Q
    ||||||||||| |||||| ||| || |||||||| ||||||||  |||||||  |||| |||| | || |||| |||| |||||||||||| |||| |||    
T  5893297 tgccacaaaaataacttccaccgcctacattccgctgctcgcattcaacccccaaacaacaacgtcaagaaccaacacaacaaccaacaacctttgaaaa 5893198  T
Q  275 aca 277  Q
    |||    
T  5893197 aca 5893195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 36933946 - 36933998
Alignment:
Q  175 ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccc 227  Q
    |||||||| |||||||||| |||||| ||||||   |||||||||||||||||    
T  36933946 ctgccacagaaacaacttccaccacctacattcaactgctcgcacacaacccc 36933998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 39020813 - 39020785
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaat 119  Q
    |||||||||||||||||||||||||||||    
T  39020813 aaatcaataaatagaaacaccaaaacaat 39020785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 91 - 371
Target Start/End: Complemental strand, 1157824 - 1157545
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaac 190  Q
    |||||||||||||||||||||||||||| | ||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1157824 aaatcaataaatagaaacaccaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaac 1157725  T
Q  191 ttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacagccgggnnnnnnn 290  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| | ||           
T  1157724 ttctaccacccacattccgctgctcgcacataacccctgaacaccaacttaaaaatctacaccacaaccaacaacctttgaaaaacagtc-ggaaaaaaa 1157626  T
Q  291 nctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaat 371  Q
     | ||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  1157625 ccccaaacaccaccattagctctcctaagcaccttcatccaaaacacacctcataaacaaccgcaaaaatcaaccaaaaat 1157545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 56 - 270
Target Start/End: Original strand, 6989309 - 6989523
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||||||||| ||| | | ||||||  |||||  |||||||||||||||||||| ||||||| | ||||||  |||||||| |||||||||||||||||    
T  6989309 tataggaaacgtctcctaacaaagggctatctccgaaatcaataaatagaaacacaaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaa 6989408  T
Q  156 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccac 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6989409 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgctgctcgcacacaacccctgaacaccaacttaaaaacctacaccac 6989508  T
Q  256 aaccaacaacttttg 270  Q
    |||||||||| ||||    
T  6989509 aaccaacaacctttg 6989523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 56 - 367
Target Start/End: Complemental strand, 7767678 - 7767355
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||||||||||||| | | ||||||| |||||  ||||||||||||| |||||||||||||| | ||||||  ||||||||  ||||||||||||||||    
T  7767678 tataggaaacgcctcctaacaaagggttatctccaaaatcaataaatataaacaccaaaacaaagctaacaccacgatcaacggaacaacataaacaaaa 7767579  T
Q  156 ------------tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaa 243  Q
                ||||||| ||||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||||||||||||    
T  7767578 gttgtaccaaaatcctcaaacatcgtcgcaactgccacaaaaacaacttccaccacccacatttcgctgctcgcacacaacccttgaacaccaacttaaa 7767479  T
Q  244 aacctacaccacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctca 343  Q
    ||||||||| |||||||||||| |||| ||||||||||||        | |||| || |||||||||| | | |||||||||||||||||||||||||||    
T  7767478 aacctacacaacaaccaacaacctttgaaaaacagccgggaataaaaccccaaagaccaccattagctctcccaagcaccttcatccaaaacacacctca 7767379  T
Q  344 taaacaatcgcaaaagccaaccaa 367  Q
     ||| || || |||||||||||||    
T  7767378 caaagaaccgtaaaagccaaccaa 7767355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 91 - 372
Target Start/End: Complemental strand, 41356117 - 41355828
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcac--------aactgccaca 182  Q
    |||||||||||||||||||| ||||||| | ||||||  |||||||| |||||||||||||||||||| |||||||| |||         || |||||||    
T  41356117 aaatcaataaatagaaacactaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaatccccaagcatcatcaattcatcataattgccaca 41356018  T
Q  183 aaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacagccgg 282  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| || |||    
T  41356017 aaaataacttctaccacccacattccgctgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaacctacaacatttgaaaaatagtcgg 41355918  T
Q  283 gnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaatc 372  Q
    |        |  |||||| |||||||||| | ||| ||||||||| |||||||||| |||||||| ||  ||||| ||||||||||||||    
T  41355917 gaaaaaaacccaaaacaccaccattagctctcctacgcaccttcacccaaaacacatctcataaataacagcaaacgccaaccaaaaatc 41355828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 91 - 371
Target Start/End: Original strand, 18696516 - 18696805
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaac 190  Q
    |||||||||||||||||||||||||||| | ||||||   ||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  18696516 aaatcaataaatagaaacaccaaaacaaagctaacaccatgatcaaagaaacaacataaacaaaatcctcaagcatcgtcgcaactgccacaataacaac 18696615  T
Q  191 ttctaccacccacattccgttgctcg---------cacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacagccg 281  Q
    ||  ||||||||||||||  ||||||         |||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||  |    
T  18696616 tttcaccacccacattccactgctcgcacacaacccacacaacccctgaacaccaacttaaaaacatacaccgcaaccaacaacctttgaaaaacagttg 18696715  T
Q  282 ggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaat 371  Q
    ||        | ||||||| ||| |||||| | | ||||||||||| || |||||||||||| ||| || ||||||||||||||||||||    
T  18696716 gggataaaaccccaaacaccaccgttagctctcccaagcaccttcacccgaaacacacctcacaaagaaccgcaaaagccaaccaaaaat 18696805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 21600705 - 21600850
Alignment:
Q  92 aatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaact 191  Q
    ||||||||||||||||||||||||||| | |||||   ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21600705 aatcaataaatagaaacaccaaaacaaagctaacatcacgaacaacgaaacaacataaacaaaatcctcaaacatcgtcacaactgccacaaaaacaact 21600804  T
Q  192 tctaccacccacattccgttgctcgcacacaacccctgaacaccaac 238  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  21600805 tctaccacccacattccgctgctcgcacacaa-ccctgaacaccaac 21600850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 131 - 257
Target Start/End: Complemental strand, 38958705 - 38958579
Alignment:
Q  131 gatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctga 230  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||| |||||||||||| |||    
T  38958705 gatcaacgaaacaacataaacaaaatcctcaagcatcgtcactactgacacaaaaacaacttctaccacccacattccactgcccgcacacaacccatga 38958606  T
Q  231 acaccaacttaaaaacctacaccacaa 257  Q
    |||||||||||||||||||||||||||    
T  38958605 acaccaacttaaaaacctacaccacaa 38958579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 56 - 372
Target Start/End: Complemental strand, 27170761 - 27170433
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||||||||||||| | | ||| ||  |||||  ||| |||||||||||||||||||||||| | ||||||  |||||||  |||||||||||||||||    
T  27170761 tataggaaacgcctcctaacaaatggctatctccgaaaccaataaatagaaacaccaaaacaaagctaacaccacgatcaatgaaacaacataaacaaaa 27170662  T
Q  156 ------------tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaa 243  Q
                ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||  | |||||||||| | || |||||||||||||||    
T  27170661 gttgtaccaaaatcctcaaacatcgtcacaactgccacaaaaataacttccaccacccacattccactactcgcacacagcaccagaacaccaacttaaa 27170562  T
Q  244 aacctacaccacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctca 343  Q
    ||||||||| ||| || ||||  |||| ||||||| ||||        | ||||||| |||||||||| | | ||||||||| | | |||||||||||||    
T  27170561 aacctacacaacagccgacaatctttgaaaaacagtcgggaataaaaccccaaacaccaccattagctctcccaagcacctttaccgaaaacacacctca 27170462  T
Q  344 taaacaatcgcaaaagccaaccaaaaatc 372  Q
     ||| || |||||||||||||||||||||    
T  27170461 caaagaaccgcaaaagccaaccaaaaatc 27170433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 151 - 340
Target Start/End: Original strand, 7271392 - 7271577
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| ||||||||||||    |||||||||||||  |||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||    
T  7271392 caaaatcctcaaacatcgtcacaac----acaaaaacaactttcaccacccatattccgctgctcgcacacaacccctgaacgtcaacttaaaaacctac 7271487  T
Q  251 accacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacc 340  Q
    ||  ||||||||||| |||| ||||||| ||||        | ||||||| ||| |||||| |   ||||||||||||||||||||||||    
T  7271488 acagcaaccaacaacctttgaaaaacagtcgggaataaaaccccaaacaccacccttagctctctcaagcaccttcatccaaaacacacc 7271577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 54 - 275
Target Start/End: Complemental strand, 6030975 - 6030744
Alignment:
Q  54 cttataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaaca- 152  Q
    ||||||||||||||||| |   |||||| ||||||  |||||||| ||||||||||||||||| |   |||||   |||||||| ||||||||||||||     
T  6030975 cttataggaaacgcctcctagcaaagggccatctctgaaatcaattaatagaaacaccaaaaccaatctaacagcacgatcaacgaaacaacataaacat 6030876  T
Q  153 -----------aaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaactta 241  Q
               |||||||||| ||||||||||||  |||||||||||||||  |||| ||| |||||| |||||||||| ||||||||||||||||||||    
T  6030875 atgtggtaccaaaatcctcaaacatcgtcacaaca-ccacaaaaacaactttcaccatccatattccgctgctcgcacaaaacccctgaacaccaactta 6030777  T
Q  242 aaaacctacaccacaaccaacaacttttggaaaa 275  Q
    |||| |||||| |||||||||||| |||| ||||    
T  6030776 aaaa-ctacacaacaaccaacaacctttgaaaaa 6030744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 26656310 - 26656436
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    ||||||| |||| |||| |||||||  |||||||||||||||  |||||||| |||| | | || |||||| ||||||||||| ||||||||||||||||    
T  26656310 caaaatcttcaaacatcttcacaaca-ccacaaaaacaactttcaccacccatattctgcttcttgcacacgacccctgaacatcaacttaaaaacctac 26656408  T
Q  251 accacaaccaacaacttttggaaaacag 278  Q
    || |||||||||||| |||| |||||||    
T  26656409 acaacaaccaacaacctttgaaaaacag 26656436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 26927897 - 26928023
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    ||||||| |||| |||| |||||||  |||||||||||||||  |||||||| |||| | | || |||||| ||||||||||| ||||||||||||||||    
T  26927897 caaaatcttcaaacatcttcacaaca-ccacaaaaacaactttcaccacccatattctgcttcttgcacacgacccctgaacatcaacttaaaaacctac 26927995  T
Q  251 accacaaccaacaacttttggaaaacag 278  Q
    || |||||||||||| |||| |||||||    
T  26927996 acaacaaccaacaacctttgaaaaacag 26928023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 1377706 - 1377881
Alignment:
Q  62 aaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaac---------- 151  Q
    ||||||||| | | ||||| | |||||  |||| |||||||||||||||||||||||   ||||||  |||||||| ||||||||||| |              
T  1377706 aaacgcctcctaacaaaggattatctccgaaattaataaatagaaacaccaaaacaaaactaacaccacgatcaacgaaacaacataatcaaaagttata 1377805  T
Q  152 --aaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacc 225  Q
      |||||||| || ||||||| |||||||||||||||||| ||| ||    ||||||||| |||||||||||||||    
T  1377806 caaaaatccttaaacatcgtcgcaactgccacaaaaacaatttccacttttcacattccgctgctcgcacacaacc 1377881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 25444588 - 25444511
Alignment:
Q  151 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccc 227  Q
    ||||| |||||| |||| || ||| |||| |||||||||||||| |||||| |||||||| || ||||||||||||||    
T  25444588 caaaaccctcaaacatcatcgcaagctgctacaaaaacaacttccaccacctacattccgctgatcgcacacaacccc 25444511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 277
Target Start/End: Complemental strand, 27632607 - 27632472
Alignment:
Q  144 acataaacaaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaac-tta 241  Q
    ||||||| |||| |||||| ||  ||||||| ||||||||||||  ||||| |||||| |||| | | |||||||||||||||||| | || |||| | |    
T  27632607 acataaaaaaaaccctcaaccaatgtcacaagctgccacaaaaattacttccaccacctacatcctgctgctcgcacacaacccctaatcagcaacgtca 27632508  T
Q  242 aaaacctacaccacaaccaacaacttttggaaaaca 277  Q
    | |||| |||| |||||||||| | |||| ||||||    
T  27632507 acaaccaacacaacaaccaacagcctttgaaaaaca 27632472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 36608267 - 36608145
Alignment:
Q  157 cctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaa-cttaaaaacctacacca 254  Q
    |||||| || |||||||| ||| ||||||||||||||  |||||  ||| |||| ||||||| |||||||||| |||| |||  | ||||||| |||| |    
T  36608267 cctcaaccaacgtcacaagctgacacaaaaacaactttcaccacttacactccgctgctcgcgcacaacccctaaacaacaatgtcaaaaaccaacacaa 36608168  T
Q  255 caaccaacaacttttggaaaaca 277  Q
    |||| |||||| |||| ||||||    
T  36608167 caacgaacaacctttgaaaaaca 36608145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 7270163 - 7270224
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaaca 152  Q
    |||||||| ||||||||||||||||| | | |||||   |||||||| ||||||||||||||    
T  7270163 aaatcaattaatagaaacaccaaaaccaagctaacagcacgatcaacgaaacaacataaaca 7270224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 62 - 372
Target Start/End: Original strand, 3921083 - 3921393
Alignment:
Q  62 aaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctca 161  Q
    ||||||||| | | ||||||  |||||  ||||||||||||||||||| |||||||  | ||||||  |||||||| |||||||||||||||||||||||    
T  3921083 aaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacatcaaaacatagctaacaccacgatcaacgaaacaacataaacaaaatcctca 3921182  T
Q  162 agcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaa 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  3921183 agcatcgtcacaactgccacaaaaacaacttctaccacccacattccgctgctcgcacacaatccttgaaaaccaacttaaaaacctacaccacaaccaa 3921282  T
Q  262 caacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagcc 361  Q
    |||| |||| ||||||||||||        | ||||||| |||||||||| | || |||||||||| | |||||||||||||||||||| ||||||||||    
T  3921283 caacctttgaaaaacagccgggaaaaaaaccccaaacaccaccattagctctcctgagcaccttcaccaaaaacacacctcataaacaaccgcaaaagcc 3921382  T
Q  362 aaccaaaaatc 372  Q
    |||||||||||    
T  3921383 aaccaaaaatc 3921393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 91 - 372
Target Start/End: Original strand, 1894922 - 1895203
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa-tcctcaagcatcgtcacaactgccacaaaaacaa 189  Q
    ||||||||||||||||||| |||||||| | ||||||  || ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  1894922 aaatcaataaatagaaacatcaaaacaaagctaacaccacgttcaacgaaacaacataaaaaaaaatcctcaagcatcgtcacaactgccacaaaaacaa 1895021  T
Q  190 cttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacagccgggnnnnnn 289  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||          
T  1895022 cttctaccacccacattccgttgctcacacacaacctctgaacaccaacttaaaaacctacaccacaaccaataacctttgaaaaacagccgggaaaaaa 1895121  T
Q  290 nnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaatc 372  Q
      || |||||| |||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  1895122 ccct-aaacaccaccattagctctcctaagcaccttcatccaaaacaaacctcataaacaaccgcaaaagccaaccaaaaatc 1895203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 56 - 372
Target Start/End: Complemental strand, 1552226 - 1551909
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    |||| |||||||||| | | ||||||  |||||  |||||||||||||||||||||||||||  | ||||||  ||||||||||||||||||||||||||    
T  1552226 tataagaaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacaccaaaacatagctaacaccacgatcaacaaaacaacataaacaaaa 1552127  T
Q  156 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccac 255  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| ||| ||||||||||||| ||||||||||||||    
T  1552126 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacacacattctgctgctcgcacacagcccttgaacaccaacttgaaaacctacaccac 1552027  T
Q  256 aaccaacaacttttggaaaacagccgg-gnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgc 354  Q
    |||||| ||| |||| |||||||  ||          | ||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||||    
T  1552026 aaccaataacctttgaaaaacagatggaaaaaaaacccccaaacaccaccattagctctcctaagcaccttcatccaaaacacgcctcataaacaatcgc 1551927  T
Q  355 aaaagccaaccaaaaatc 372  Q
    ||||||||||||||||||    
T  1551926 aaaagccaaccaaaaatc 1551909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 56 - 372
Target Start/End: Complemental strand, 17282577 - 17282280
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||||||||||||| | | ||||||  |||||  ||||||||||||||||||||||||| ||   ||||||  |||||||| |||||||||||||||||    
T  17282577 tataggaaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacaccaaaataaatctaacaccacgatcaacgaaacaacataaacaaaa 17282478  T
Q  156 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||| ||||||||||||||                  |||||||    
T  17282477 tcctcaagcatcgtcacaactgccacaaaaacaacttctacca-ccacaatctgctgctcacacacaacccctga------------------acaccac 17282397  T
Q  256 aaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgca 355  Q
    |||||||||| |||| ||||||||| ||        ||||||||| ||| |||||| |  ||||||||||||||||||||||||||||||||||| |||     
T  17282396 aaccaacaacctttgaaaaacagccaggaaaaaaacctcaaacaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcg 17282297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 56 - 259
Target Start/End: Original strand, 17374786 - 17375000
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||||||||||||| | | | ||||  |||||  ||||||||||||||||| | |||||||| | ||||||  |||||||| |||||||||||||||||    
T  17374786 tataggaaacgcctcctaagagagggctatctccgaaatcaataaatagaaaaatcaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaa 17374885  T
Q  156 ------------tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaa 243  Q
                ||||||| |||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  17374886 gttgtaccaaaatcctcaaacatcgt-acaactgccacaaaaataacttccaccacccacattccgctgctcgcacacaacccctgaacaccaaattaaa 17374984  T
Q  244 aacctacaccacaacc 259  Q
    ||||| ||| ||||||    
T  17374985 aacctccacaacaacc 17375000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 342
Target Start/End: Original strand, 4869102 - 4869398
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaaca--- 152  Q
    ||||||||||||||| |   |||||| ||||||  |||||||| ||||||||||||||||| | | |||||   |||||||| ||||||||||||||       
T  4869102 tataggaaacgcctcctagcaaagggccatctctgaaatcaattaatagaaacaccaaaaccaagctaacagggcgatcaacgaaacaacataaacatat 4869201  T
Q  153 ---------aaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaa 243  Q
             |||||||||| ||||||||||||  |||||||||||||||  |||||||| |||||| |||||||||| ||||||||||||||||||||||    
T  4869202 gtggtaccaaaatcctcaaacatcgtcacaaca-ccacaaaaacaactttcaccacccatattccgctgctcgcacaaaacccctgaacaccaacttaaa 4869300  T
Q  244 aacctacaccacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctc 342  Q
    || |||||| |||||||||||| |||| |||| |  ||||        | ||||||| |||||||||| | | || |||||||| ||||||||||||||    
T  4869301 aa-ctacacaacaaccaacaacctttgaaaaatattcgggaataaaaccccaaacaccaccattagctctcccaaacaccttcacccaaaacacacctc 4869398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 34659832 - 34659955
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| |||||||  |||  |||||||||||||||  |||||||| |||||| |||||||||||||| | |||||| ||||||||||||||||    
T  34659832 caaaatcctcaaacatcgtctgaaca-ccacaaaaacaactttcaccacccatattccgctgctcgcacacaacgcttgaacatcaacttaaaaacctac 34659930  T
Q  251 accacaaccaacaacttttggaaaa 275  Q
    || |||||||||||| |||| ||||    
T  34659931 acaacaaccaacaacatttgaaaaa 34659955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 3258030 - 3257982
Alignment:
Q  175 ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaa 223  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  3258030 ctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaa 3257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 56 - 372
Target Start/End: Original strand, 53201735 - 53202053
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    |||||||||| |||| | | ||||||  |||||  |||||||||||||||||||||||||||| | |||||   ||||||||||||||||||||||||||    
T  53201735 tataggaaacacctcctaacaaagggctatctccgaaatcaataaatagaaacaccaaaacaaagctaacatcacgatcaacaaaacaacataaacaaaa 53201834  T
Q  156 tcctcaagcatcgtcacaactgccacaaaaacaacttctac--cacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacacc 253  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  53201835 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacacccacattccgctgctcgcacacaacccctgaacatcaacttaaaaacctacacc 53201934  T
Q  254 acaaccaacaacttttggaaaacagccggg-nnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatc 352  Q
    |||||||||||| ||| |||||||||||||         | ||||||| ||||| |||| | |||||||||||||||||||||||||||| ||||||| |    
T  53201935 acaaccaacaaccttt-gaaaacagccgggaaaaaaaaccccaaacaccaccatgagctctcctaagcaccttcatccaaaacacacctcgtaaacaacc 53202033  T
Q  353 gcaaaagccaaccaaaaatc 372  Q
    |||||||| |||||||||||    
T  53202034 gcaaaagctaaccaaaaatc 53202053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 56 - 372
Target Start/End: Complemental strand, 34227632 - 34227316
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    |||||||| | |||||| | ||||||  |||||  |||||||||||||||||||||||||||| | ||||||  |||||||| |||||||||||||||||    
T  34227632 tataggaatcacctcttaacaaagggctatctccgaaatcaataaatagaaacaccaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaa 34227533  T
Q  156 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccac 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||| ||    
T  34227532 tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattttgctactcgcacacaacccctgaacaccaacttaaaaacctacacaac 34227433  T
Q  256 aaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgca 355  Q
    | |||||||| || | |||||||||| |        | ||||||| |||||| | | | |||||||||||||||||||||||||||||||||||| | ||    
T  34227432 agccaacaaccttagaaaaacagccgtgaaaaaaaacccaaacaccaccattggttctcctaagcaccttcatccaaaacacacctcataaacaaccaca 34227333  T
Q  356 aaagccaaccaaaaatc 372  Q
    |||||||||||||||||    
T  34227332 aaagccaaccaaaaatc 34227316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 91 - 372
Target Start/End: Complemental strand, 47519052 - 47518774
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaac 190  Q
    |||||||||||| ||||||||||||||| | ||||||   ||||||| |||||   || |||||| |||||||||||| |||||||||||||||||||||    
T  47519052 aaatcaataaatcgaaacaccaaaacaaagctaacaccaggatcaacgaaaca---tatacaaaaacctcaagcatcgccacaactgccacaaaaacaac 47518956  T
Q  191 ttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacagccgggnnnnnnn 290  Q
    ||||||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||| ||||           
T  47518955 ttctaccacccacattctgctgctcgcacacaactcctgaacgccaacttaaaaacctacaccacaaccaacaacctttgaaaaacagtcgggaaaaaaa 47518856  T
Q  291 nctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaatc 372  Q
     ||||||||| |||||||||| | ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  47518855 cctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaaccgcaaaagccaaccaaaaatc 47518774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 173 - 372
Target Start/End: Complemental strand, 23054793 - 23054593
Alignment:
Q  173 aactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttgga 272  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||| |    
T  23054793 aactgccacaaaaacaacttccaccacccacattccggtgctcgcacacaaaccctgaacaccaacttaaaaacctacacaacaactaacaacctttgaa 23054694  T
Q  273 aaacagccggg-nnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaat 371  Q
    ||| || ||||         | ||||||| || ||||||| |   ||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||    
T  23054693 aaagagtcgggaataaaacccccaaacaccacaattagctctctcaagcaccttcatccaaaacacacctcacaaagaaccgcaaaagccagccaaaaat 23054594  T
Q  372 c 372  Q
    |    
T  23054593 c 23054593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 342
Target Start/End: Original strand, 6409594 - 6409786
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||| ||||||  || |||||| ||||| |||| |||||||||||    
T  6409594 caaaatcctcaaacatcatcacaactgccacaaaaacaacttccaccacctacattccgctgctcgatcataacccccgaacaacaacataaaaacctac 6409693  T
Q  251 accacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatcc-aaaacacacctc 342  Q
    |  |||||||||||| |||| ||||||||||||        ||||||||  |||||||||| | |  ||||||||||||| ||||||||||||    
T  6409694 ataacaaccaacaacctttgaaaaacagccgggaagaaaacctcaaacaacaccattagctctcccgagcaccttcatccaaaaacacacctc 6409786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 31360666 - 31360549
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaac 190  Q
    |||||||||||||||||||| |||||||   |||||   |||||||| | ||||||||||||||||| |||| ||||||||||| | |||||||||||||    
T  31360666 aaatcaataaatagaaacactaaaacaaaactaacatcacgatcaacgacacaacataaacaaaatcttcaaacatcgtcacaattaccacaaaaacaac 31360567  T
Q  191 ttctaccacccacattcc 208  Q
    ||||||||||||||||||    
T  31360566 ttctaccacccacattcc 31360549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 14566630 - 14566436
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||||||||||||| | | ||||||  |||||  |||||| ||||||||||||| | | ||| | ||||||  |||||||| |||||||||||||||||    
T  14566630 tataggaaacgcctcctaacaaagggctatctccgaaatcagtaaatagaaacacaagaccaaagctaacaccacgatcaacgaaacaacataaacaaaa 14566531  T
Q  156 ------------tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaac 238  Q
                ||||||| ||| |||||||| |||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  14566530 gttgtaccaaaatcctcaaacatagtcacaacagccacataaacaacttccaccaccaacattccgctgctcgcacacaacccctgaacaccaac 14566436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 370
Target Start/End: Complemental strand, 24958107 - 24957913
Alignment:
Q  177 gccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaac 276  Q
    ||||||||||||||||| |||||| |||||  ||||||||| ||||||||||||||| |||| |||||| ||| || |||||||||||| |||| |||||    
T  24958107 gccacaaaaacaacttccaccacctacattatgttgctcgctcacaacccctgaacaacaacataaaaatctaaacaacaaccaacaacctttgaaaaac 24958008  T
Q  277 agccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatcc-aaaacacacctcataaacaatcgcaaaagccaaccaaaaa 370  Q
    ||||| |        | ||||||  ||||||| |||| |  ||||||||||||| |||||||||||| |||| || || |||| || ||||||||    
T  24958007 agccgcgaagaaaaccccaaacaacaccattaactttcccgagcaccttcatccaaaaacacacctcttaaagaaccgtaaaaaccgaccaaaaa 24957913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 14791946 - 14791995
Alignment:
Q  175 ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaac 224  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  14791946 ctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaac 14791995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 50589289 - 50589390
Alignment:
Q  182 aaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaac-ttaaaaacctacaccacaaccaacaacttttggaaaacagcc 280  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||   |||| |||| | ||  |||||||| |||||||||||| |||| |||||| ||    
T  50589289 aaaaacaacttccaccacccacaatccgctgctcgcacacaacccacaaacagcaacgtcaagcacctacacaacaaccaacaacctttgaaaaacaacc 50589388  T
Q  281 gg 282  Q
    ||    
T  50589389 gg 50589390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 23054881 - 23054823
Alignment:
Q  97 ataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    |||||||||||||| ||||||| | ||||||  |||||||| |||||||||||||||||    
T  23054881 ataaatagaaacactaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaa 23054823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 12887961 - 12888045
Alignment:
Q  144 acataaacaaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccc 227  Q
    ||||||| ||||  ||||| || |||||||| || ||||||||||||||||  || || |||||||||||||||||||| |||||    
T  12887961 acataaaaaaaaatctcaaccaacgtcacaagctaccacaaaaacaacttcctccccctacattccgttgctcgcacaccacccc 12888045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 23533066 - 23533167
Alignment:
Q  182 aaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaa-aacctacaccacaaccaacaacttttggaaaacagcc 280  Q
    |||||||||||| |||||| ||| |  | ||||||||||||||| |  |||| |||| | || |||| |||| ||||||||||||||||| |||||| ||    
T  23533066 aaaaacaacttccaccacctacaatatgctgctcgcacacaaccaccaaacaacaacgtcaagaaccaacacaacaaccaacaacttttgtaaaacaacc 23533165  T
Q  281 gg 282  Q
    ||    
T  23533166 gg 23533167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 28149650 - 28149606
Alignment:
Q  182 aaaaacaacttctaccacccacattccgttgctcgcacacaaccc 226  Q
    |||||||||||| |||||| ||| || ||||||||||||||||||    
T  28149650 aaaaacaacttccaccacctacaatcagttgctcgcacacaaccc 28149606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 56 - 372
Target Start/End: Original strand, 20740078 - 20740402
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    |||| |||||||||| | | ||||||  |||||  ||||||||||||||||||||||||| |  | ||||||  ||||||||||||||||||||||||||    
T  20740078 tataagaaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacaccaaaatatagctaacaccacgatcaacaaaacaacataaacaaaa 20740177  T
Q  156 tcctcaagcatcgtcacaa-------ctgccacaaaa-acaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacc 247  Q
    |||||||||||||||||||       ||||||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  20740178 tcctcaagcatcgtcacaagtcacaactgccacaaaaaacaacttctatcacccacattccgctgctcgcacacaacccttgaacaccaacttaaaaacc 20740277  T
Q  248 tacaccacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaa 347  Q
    |||||||||||||||||| |||| ||||||||||||        ||||||||| |||||||||| | ||||||||||||| |||||||||| ||||||||    
T  20740278 tacaccacaaccaacaacctttgaaaaacagccgggaaaaaaacctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaa 20740377  T
Q  348 caatcgcaaaagccaaccaaaaatc 372  Q
    ||||||||||||||||| |||||||    
T  20740378 caatcgcaaaagccaactaaaaatc 20740402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 151 - 370
Target Start/End: Original strand, 21880996 - 21881214
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| || | |||||||    
T  21880996 caaaatcctcaaacatcgtcacaactgccacaaaaataacttccaccacccacattccgctgctcgcacacaacccctgaacaccaaatt-acaacctac 21881094  T
Q  251 accacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaa 350  Q
    || |||||||||||| |||| ||||||||||||        ||||||||| |||||||||| | | ||||||||||| ||||||||||||||| ||| ||    
T  21881095 acaacaaccaacaacctttgaaaaacagccgggaataaaacctcaaacaccaccattagctctcccaagcaccttcacccaaaacacacctcacaaagaa 21881194  T
Q  351 tcgcaaaagccaaccaaaaa 370  Q
      ||||||| ||||||||||    
T  21881195 ctgcaaaagtcaaccaaaaa 21881214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 95 - 370
Target Start/End: Complemental strand, 34213996 - 34213716
Alignment:
Q  95 caataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa------------tcctcaagcatcgtcacaactgccaca 182  Q
    |||||||||| | ||||||||||| ||||||||  ||||||||||||||||||||||||||            ||| ||| |||| ||| | ||||||||    
T  34213996 caataaatagtagcaccaaaacaaagttaacaccacgatcaacaaaacaacataaacaaaagttgtaccaaaatccccaaacatcctcatagctgccaca 34213897  T
Q  183 aaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacagccgg 282  Q
    ||||||||||  ||||||||||||  | |||| ||||||||||||  |||| |||||||||||||||||       ||||||| |||| |||||||||||    
T  34213896 aaaacaactttcaccacccacattttgctgcttgcacacaacccccaaacaacaacttaaaaacctaca-------caacaacctttgaaaaacagccgg 34213804  T
Q  283 gnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaa 370  Q
    |        | ||||||| |||||||||| | | ||||||| |   ||||||||||||||| ||| ||||||||||||||||||||||    
T  34213803 gaataaaatcccaaacaccaccattagctctcccaagcaccatatcccaaaacacacctcacaaagaatcgcaaaagccaaccaaaaa 34213716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 278
Target Start/End: Complemental strand, 3524206 - 3523971
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaa-aacaatgttaacacttcgatcaacaaaacaacataaacaaa 154  Q
    ||||||||||||||||| | ||||||  |||||  ||||||||||||||||||||||| ||||| | || |||   ||||||| ||||||||||||||||    
T  3524206 tataggaaacgcctcttaacaaagggctatctccaaaatcaataaatagaaacaccaacaacaaagctatcaccatgatcaacgaaacaacataaacaaa 3524107  T
Q  155 a------------tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaa 242  Q
    |            ||||||| |||| ||||||||||||||||||||||||  | |||| ||| || | ||||| ||||||||||| ||||| |||| |||    
T  3524106 agttgtaccaaaatcctcaaacatcatcacaactgccacaaaaacaacttacatcacctacaatctgctgctcacacacaacccccgaacaacaacataa 3524007  T
Q  243 aaacctacaccacaaccaacaacttttggaaaacag 278  Q
     ||| ||||| |||||||||||| |||  |||||||    
T  3524006 taacttacacaacaaccaacaacctttaaaaaacag 3523971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 22696255 - 22696306
Alignment:
Q  176 tgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccc 227  Q
    ||||| |||||||||||| |||||| |||||  |||||||||||||||||||    
T  22696255 tgccaaaaaaacaacttccaccacctacattttgttgctcgcacacaacccc 22696306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 34503327 - 34503274
Alignment:
Q  173 aactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaaccc 226  Q
    |||| |||||||||||||||| |||||| |||||||| |||||| |||| ||||    
T  34503327 aactaccacaaaaacaacttccaccacctacattccgatgctcgtacactaccc 34503274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 104 - 372
Target Start/End: Original strand, 34117577 - 34117845
Alignment:
Q  104 gaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccac 203  Q
    ||||||||||||||| | ||||||  |||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||    
T  34117577 gaaacaccaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaatcctcaagcatcgttgcaactgccacaaaaacaacttccaccacccac 34117676  T
Q  204 attccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaac 303  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||        | ||||||| |     
T  34117677 attccgctgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccatcaacttttgaaaaacagccggggataaaaccccaaacaccaa 34117776  T
Q  304 cattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaatc 372  Q
    | |||||| | | |||||||||||||||||||| |||||| ||| || |||||||||||||||||||||    
T  34117777 cgttagctctcccaagcaccttcatccaaaacatacctcacaaagaaccgcaaaagccaaccaaaaatc 34117845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 25791142 - 25791283
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaatcctcaagcatcgtcacaactgccacaaaaacaac 190  Q
    ||||||||||||||||||| |||||||| | ||||||  |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25791142 aaatcaataaatagaaacatcaaaacaaagctaacaccacgatcaatgaaacaacataaacaaaatcctcaagcatcgtcacaactgtcacaaaaacaac 25791241  T
Q  191 ttctaccacccacattccgttgctcgcacacaacccctgaac 232  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  25791242 ttctaccacccacattccgctgcttgcacacaacccctgaac 25791283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 151 - 369
Target Start/End: Original strand, 34654516 - 34654735
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  34654516 caaaatcctcaaacatcgtcgcaactgtcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccctgaacaccaacttaaaaacctcc 34654615  T
Q  251 accacaaccaacaacttttggaaaacagccggg-nnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaaca 349  Q
    || ||||| |||||| |||| |||| |||||||         | ||||||| |||||||||| | | || |||||||| ||||| ||||||||| ||| |    
T  34654616 acaacaactaacaacctttgaaaaagagccgggaataaaacccccaaacaccaccattagctctcccaaacaccttcacccaaagcacacctcacaaaga 34654715  T
Q  350 atcgcaaaagccaaccaaaa 369  Q
    | | |||||| |||||||||    
T  34654716 accacaaaagtcaaccaaaa 34654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 342
Target Start/End: Original strand, 615249 - 615511
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaaca------------aaatcctcaagcatcgtcacaactgc 178  Q
    |||||||| ||||||||||||||||| | | |||||   |||||||||||||||||||||||            |||||||||| | ||||||||||  |    
T  615249 aaatcaattaatagaaacaccaaaaccaagctaacagcacgatcaacaaaacaacataaacatatggtgtaccaaaatcctcaaacgtcgtcacaaca-c 615347  T
Q  179 cacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacag 278  Q
    ||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||    
T  615348 cacaaaaacaactttcaccgcccatattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacacaacaaccaacaacttttgaaaaatag 615447  T
Q  279 ccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctc 342  Q
     ||||        |  |||||| ||| |||||| | | || |||||||||||||||||||||||    
T  615448 tcgggaataaaaccctaaacaccacccttagctctcccaaacaccttcatccaaaacacacctc 615511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 95 - 280
Target Start/End: Complemental strand, 39709611 - 39709413
Alignment:
Q  95 caataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa------------tcctcaagcatcgtcacaactgccaca 182  Q
    |||||||||||||||||||||||| | ||||||  |||||||| |||||||| ||||||||            ||||||| ||||| |||||||||||||    
T  39709611 caataaatagaaacaccaaaacaaagctaacaccacgatcaacgaaacaacaaaaacaaaagttgtaccaaaatcctcaaacatcgccacaactgccaca 39709512  T
Q  183 aaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaa-cttttggaaaacagcc 280  Q
    ||||||||||  ||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||| | ||||||||| |||||| |||||||||    
T  39709511 aaaacaactttcaccacccacattctgctgctcgcacacaacccccgaacaccaacttaaaaacttacacaataaccaacaaccttttgaaaaacagcc 39709413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 32947312 - 32947228
Alignment:
Q  144 acataaacaaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccc 227  Q
    ||||||| |||| |||||| || |||||||| |||| |||||||||||||| |||| | |||| ||| |||||||||||||||||    
T  32947312 acataaagaaaaccctcaaccaacgtcacaagctgctacaaaaacaacttccaccatctacatcccgctgctcgcacacaacccc 32947228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 370
Target Start/End: Original strand, 10408297 - 10408623
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    |||||||||| |||| | | ||||||| |||||  ||||||||||||||||||||||||| || |||||||   | |||||| |||||||||||||||||    
T  10408297 tataggaaacacctcctaacaaagggttatctccgaaatcaataaatagaaacaccaaaataaagttaacatcacaatcaactaaacaacataaacaaaa 10408396  T
Q  156 ------------tcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaa 243  Q
                | ||||| ||||||| |||||||||||||||||||||| ||| || |||||||| ||||||||||||||| |||||||||||||||||    
T  10408397 gttgtaccgaaattctcaaacatcgtcgcaactgccacaaaaacaacttccaccgcctacattccgctgctcgcacacaacctctgaacaccaacttaaa 10408496  T
Q  244 aacctacaccacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctca 343  Q
    ||||||||| | |||||||||| |||| |||  |||||||        | ||||||| |||||||||| | | |||||||||||  |||| ||| |||||    
T  10408497 aacctacacaataaccaacaacctttgaaaattagccgggaataaagccccaaacaccaccattagctctcccaagcaccttcacgcaaagcactcctca 10408596  T
Q  344 taaacaatcgcaaaagccaaccaaaaa 370  Q
     ||| |||| |||||||||||||||||    
T  10408597 caaagaatcacaaaagccaaccaaaaa 10408623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 370
Target Start/End: Original strand, 5994189 - 5994407
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| ||||||||||||| |||||||||||||||| |||||| | |||| | ||||||| ||||| ||| | ||| |||  |||||||||||    
T  5994189 caaaatcctcaaacatcgtcacaactaccacaaaaacaacttccaccacctagattctgctgctcgcgcacaatccccggacaacaatataaaaacctac 5994288  T
Q  251 accacaaccaacaacttttggaaaacagccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaa 350  Q
    || ||||||||||||  |||| |||||| ||||          ||||||| |||||||  | | | ||||||||||||||||||||||||||  ||| ||    
T  5994289 acaacaaccaacaac-cttgggaaacagtcgggaatagaacgccaaacaccaccattaattctcccaagcaccttcatccaaaacacacctctcaaaaaa 5994387  T
Q  351 tcgcaaaagccaaccaaaaa 370  Q
     |||||||||||||||||||    
T  5994388 ccgcaaaagccaaccaaaaa 5994407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 278
Target Start/End: Original strand, 20860768 - 20861009
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa 155  Q
    ||||||||||||||| | | ||||||  |||||  ||| |||||||||||||||||||||||| | ||||||  | |||||| |||||||||||||||||    
T  20860768 tataggaaacgcctcctaaaaaagggctatctccgaaaccaataaatagaaacaccaaaacaaagctaacaccgcaatcaacgaaacaacataaacaaaa 20860867  T
Q  156 ------------tcctcaagcatcgtcacaactgccaca-------aaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacacca 236  Q
                ||||||| ||  |||||||||||||||       |||| |||||| |||| ||||||| || ||||| ||||||||||||||||||||    
T  20860868 gttgtaccaaagtcctcaaacaaggtcacaactgccacacaaaaaaaaaaaaacttccaccaaccacatttcgctgctctcacacaacccctgaacacca 20860967  T
Q  237 acttaaaaacctacaccacaaccaacaacttttggaaaacag 278  Q
    ||||||||||||| || |||||||||||| |||| |||||||    
T  20860968 acttaaaaacctatacaacaaccaacaacctttgaaaaacag 20861009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 6443596 - 6443728
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||||  |||||  |||||| || ||||||||  ||||| |||| |||||||||||    
T  6443596 caaaatcctcaaacatcatcacaactgccacaaaaacaacttccaccacgtacattttgttgcttgctcacaaccctcgaacaacaacataaaaacctac 6443695  T
Q  251 accacaaccaacaacttttggaaaacagccggg 283  Q
    || |||| ||| ||| |||| ||||||||||||    
T  6443696 acaacaatcaataacctttgaaaaacagccggg 6443728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 91 - 370
Target Start/End: Original strand, 43275457 - 43275738
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaaa------------tcctcaagcatcgtcacaactgc 178  Q
    ||||||||||||||||||| |||||||| | ||||||  |||||||| |||||||||||||||||            ||||||| ||| ||||||| |||    
T  43275457 aaatcaataaatagaaacatcaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacattgtcacaagtgc 43275556  T
Q  179 cacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaaccaacaacttttggaaaacag 278  Q
    ||||||||||||||| |||||||||          |||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||| |||||||    
T  43275557 cacaaaaacaacttccaccacccac----------tcgcacacaacccctgaacatcaaattaaaaacctacacaacaaccaacaacctttgaaaaacag 43275646  T
Q  279 ccgggnnnnnnnnctcaaacacaaccattagcttttctaagcaccttcatccaaaacacacctcataaacaatcgcaaaagccaaccaaaaa 370  Q
    |||          |  |||||| |||||||||| | | ||||||||||||||||||||||||||| ||| || |||||||| ||||||||||    
T  43275647 ccgataataaaaccctaaacaccaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccgcaaaaggcaaccaaaaa 43275738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 18270254 - 18270131
Alignment:
Q  151 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaacttaaaaacctac 250  Q
    |||||||||||| ||||||||||||  ||||||||| |||||  |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18270254 caaaatcctcaaacatcgtcacaaca-ccacaaaaataactttcaccacccatattccgctgctcgcacacaacccctgaacaccaacttaaaaacctac 18270156  T
Q  251 accacaaccaacaacttttggaaaa 275  Q
    || |||||||||||| |||| ||||    
T  18270155 acaacaaccaacaacctttgaaaaa 18270131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 893591 - 893410
Alignment:
Q  55 ttataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaa---- 150  Q
    |||||||||||||||| | | ||||||  |||||  |||||||||||||||||||||||||||| | ||||||  |||||||  ||| ||||||||        
T  893591 ttataggaaacgcctcctaacaaagggctatctctgaaatcaataaatagaaacaccaaaacaaagctaacaccacgatcaatgaaaaaacataaataaa 893492  T
Q  151 --------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaac 224  Q
            ||||||| | || |||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||    
T  893491 agttgtaccaaaatctttaaacatcgtcacaactgccatcaaaacaacttccaccacccacattccgctgctcgcacacaac 893410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 25498548 - 25498656
Alignment:
Q  175 ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaac-ttaaaaacctacaccacaaccaacaacttttggaa 273  Q
    ||||||||||||||||||| |||||| |||||| | |||||||||||||||||  |||| |||| | || |||| |||| |||||||| ||| |||| ||    
T  25498548 ctgccacaaaaacaacttccaccacctacattctgctgctcgcacacaacccccaaacaacaacgtcaagaaccaacacaacaaccaataacctttgaaa 25498647  T
Q  274 aacagccgg 282  Q
    |||| ||||    
T  25498648 aacaaccgg 25498656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 17114046 - 17113970
Alignment:
Q  152 aaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccc 227  Q
    |||| |||||| || |||||||| ||||||||||| ||||||| || ||| |||||||| |||||||||||||||||    
T  17114046 aaaaacctcaaccaacgtcacaagctgccacaaaagcaacttccactacctacattccgctgctcgcacacaacccc 17113970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 18270326 - 18270266
Alignment:
Q  91 aaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaac 151  Q
    |||||||| ||||||||||||||||| | | |||||   |||||||| |||||||||||||    
T  18270326 aaatcaattaatagaaacaccaaaaccaagctaacagcacgatcaacgaaacaacataaac 18270266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 27741659 - 27741608
Alignment:
Q  176 tgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccct 228  Q
    ||||||||||||||| || ||||   |||||||||||||||||||||||||||    
T  27741659 tgccacaaaaacaacatccaccatt-acattccgttgctcgcacacaacccct 27741608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 250745 - 250939
Alignment:
Q  56 tataggaaacgcctcttgataaagggtcatctcataaatcaataaatagaaacaccaaaacaatgttaacacttcgatcaacaaaacaacataaacaaa- 154  Q
    ||||||||||||||| | | ||||||  |||||  |||||| ||||||||||||| | | ||| | ||||||  |||||||| ||||||||||||||||     
T  250745 tataggaaacgcctcctaacaaagggctatctccgaaatcagtaaatagaaacacaagaccaaagctaacaccacgatcaacgaaacaacataaacaaaa 250844  T
Q  155 -----------atcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccctgaacaccaac 238  Q
               |||||||| ||| |||||||| |||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  250845 gttgtaccaaaatcctcaaacatagtcacaacagccacataaacaacttccaccaccaacattccgctgctcgcacacaacccctgaacaccaac 250939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 47785 - 47736
Alignment:
Q  175 ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaac 224  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  47785 ctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaac 47736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 54040 - 54117
Alignment:
Q  151 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgttgctcgcacacaacccc 227  Q
    ||||| |||||| |||| |||||| ||| || |||||||||||| |||||| ||||| || |||||||||| ||||||    
T  54040 caaaaccctcaaacatcatcacaagctgacagaaaaacaacttccaccacctacatttcgctgctcgcacataacccc 54117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University