View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_high_15 (Length: 372)
Name: NF19406_high_15
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 355
Target Start/End: Complemental strand, 12281598 - 12281256
Alignment:
| Q |
13 |
aatatggacccgtaatgtacctaaaaatgggatcacacaacatggttgtagcctcaacaccttcttcagccaaagcatttcttaaaacacttgaccaaaa |
112 |
Q |
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| T |
12281598 |
aatatggacccgtaatgtacctaaaaatgggatcacacaacatggttgtagcctcaacgccttcttcagccaaagcatttcttaaaacacttgacctaaa |
12281499 |
T |
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| Q |
113 |
tttttcaaataggccgccgaacgctggcgcaacacacctagcttatgattcacaagacatggttttcgcggactatggatctaggtggaaattacttaga |
212 |
Q |
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| T |
12281498 |
tttttcaaataggccgccgaacgctggcgcaacacacctagcttatgattcacaagacatggttttcgcggactatggatctaggtggaaattacttaga |
12281399 |
T |
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| Q |
213 |
aaactaagtaacttacacatgctcggtggaaaggctcttgaagattggtcgaaaattcgaggggacgaaatgggacacatgattcgtacaatgtatgatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12281398 |
aaactaagtaacttacacatgctcggtggaaaggctcttgaagattggtcgaaaattcgaggggacgaaatgggacacatgattcgtacaatgtatgatt |
12281299 |
T |
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| Q |
313 |
gtagcaagaaagatgaatccattgttgtgtctgagatgttaac |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12281298 |
gtagcaagaaagatgaatccattgttgtgtctgagatgttaac |
12281256 |
T |
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