View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_high_18 (Length: 335)
Name: NF19406_high_18
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 11836159 - 11836400
Alignment:
| Q |
20 |
actatgaactcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaattttttggg |
119 |
Q |
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| T |
11836159 |
actatgaactcaatatttccatgcttagctgctttcaatattgcatcgtatgctgaagcctctctcagttcagattccttaaattcttgaattttttggg |
11836258 |
T |
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| Q |
120 |
acaagcaattcaatatttcaagcactagacggtgcgtcactttctgatcgtatannnnnnnnatcgctggtcatcgtagaattggagagagggaagtaat |
219 |
Q |
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| T |
11836259 |
acaagcaattcaatatttcaagcactagacgatgcatcattttctgatcgtatatttcttttatcgctggtcatcatagaattggagagagggaattaat |
11836358 |
T |
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| Q |
220 |
tagtgatcaactcaatatattcaaattaatacaacaacactga |
262 |
Q |
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| T |
11836359 |
tagtgatcaactcaatat-ttttaattaatacaacaacactga |
11836400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 11791912 - 11792152
Alignment:
| Q |
21 |
ctatgaactcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaattttttggga |
120 |
Q |
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||||||||||||| ||||||||||||||||||| ||||| |||| | ||||||| ||||| ||||||||||||| |||||| |||||||||||| | | |
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| T |
11791912 |
ctatgaactcaatatttccatgcttagctgcttgtaacatggcatcgtatgctgaagcctctctcagttcagattccttaaattcttgaatttttttgta |
11792011 |
T |
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| Q |
121 |
caagcaattcaatatttcaagcactagacggtgcgtcactttctgatcgtatannnnnnnnatcgctggtcatcgtagaattggagagagggaagtaatt |
220 |
Q |
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| T |
11792012 |
caagcaattcaatatttcaagcactagactgtgggtcattttctgatcgtatatttcttttattactggtgatcatagaattggagagagggaattgatt |
11792111 |
T |
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| Q |
221 |
agtgatcaactcaatatattcaaattaatacaacaacactg |
261 |
Q |
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|||| |||| |||||||| |||| |||||||||||||| |
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| T |
11792112 |
agtgctcaagtcaatataagttaattgatacaacaacactg |
11792152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 11760684 - 11760816
Alignment:
| Q |
21 |
ctatgaactcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaattttttggga |
120 |
Q |
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||||||||||||| ||||||| ||||||||| | ||||||||||| | ||||||| ||||| || |||||||||| |||||| |||||||||||| ||| |
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| T |
11760684 |
ctatgaactcaatatttccattcttagctgcctgcaacattgcatccaatgctgaagcctctctcggttcagattccttaaattcttgaattttttcgga |
11760783 |
T |
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| Q |
121 |
caagcaattcaatatttcaagcactagacggtg |
153 |
Q |
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| T |
11760784 |
ccagcaatctaatatttcaaggactcgacggtg |
11760816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 11883825 - 11883971
Alignment:
| Q |
21 |
ctatgaactcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaattttttggga |
120 |
Q |
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|||| |||||||| | |||||||| ||||||| ||||||||||| | || ||| ||||| | ||||| ||||| ||||| |||||||| ||||| |
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| T |
11883825 |
ctataaactcaataatcccatgctttgctgcttgcaacattgcatcgtaagccgaagcctctctaagttctgattccttaaactcttgaattctttggtg |
11883924 |
T |
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| Q |
121 |
caagcaattcaatatttcaagcactagacggtgcgtcactttctgat |
167 |
Q |
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||||||| ||||||||||||| ||||||||| |||| |||||||| |
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| T |
11883925 |
caagcaactcaatatttcaagagctagacggtaggtcattttctgat |
11883971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 11836487 - 11836539
Alignment:
| Q |
266 |
attaaaacccatgaattcctacttctctacgacttagatggtaaaagcactta |
318 |
Q |
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| T |
11836487 |
attaaaacccgtgaattcaaacttctctacaacttagatggtaaaagcactta |
11836539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 11747345 - 11747301
Alignment:
| Q |
21 |
ctatgaactcaatgtttccatgcttagctgcttccaacattgcat |
65 |
Q |
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||||||||||||| ||||||||||| ||||||| ||||||||||| |
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| T |
11747345 |
ctatgaactcaatatttccatgctttgctgcttgcaacattgcat |
11747301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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