View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_high_21 (Length: 310)
Name: NF19406_high_21
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 3187359 - 3187640
Alignment:
| Q |
15 |
aaatcaactattattttgcttgaacataaatattccatcaaattaatgtaactaaaaggaattcgattaaaggaatagtttgatcacttgtcttctcatt |
114 |
Q |
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| T |
3187359 |
aaatcaactattattttgcttgaacataaatattccatcaaattaatgtaactaaaaggaattcgtttaaaggaatagtttgatcacttgtcttctcatt |
3187458 |
T |
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| Q |
115 |
tatattgtcaaacttccataatgttcctttattttaattagcttctaaatatgtcttttgcctatgtttagtctcttctcctattgttttgcctaaacat |
214 |
Q |
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| T |
3187459 |
tatatcgtcaaacttccataatgttcctttattttaattagcttctaaatatgtctttcgactatgtttagtctcttctcctattgttttgcctcaacat |
3187558 |
T |
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| Q |
215 |
tcttcaattgtttgagttttccactctgatatgtcggttaatgctcaagattgttgtattaattaagctttaaatatatgtt |
296 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3187559 |
tcttcaattatttgagttttccattctgatatgtcggttaatgctcaagattgttgtattaattaagctttaaatatatgtt |
3187640 |
T |
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Back To:
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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 29699021 - 29698905
Alignment:
| Q |
98 |
tcacttgtcttctcatttatattgtcaaacttccataatgttcctttattttaattagcttctaaatatgtcttttgcctatgtttagtctcttctccta |
197 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||||| |
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| T |
29699021 |
tcacttgtcttctcatttattttgtcaaacctccataatgttcctttattttaattagcttctaaatatgtctttcggctatg-ttattctcttctccta |
29698923 |
T |
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| Q |
198 |
ttgttttgcctaaacatt |
215 |
Q |
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| T |
29698922 |
ttgttttgcctcaacatt |
29698905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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