View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_high_22 (Length: 307)
Name: NF19406_high_22
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_high_22 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 20729808 - 20729664
Alignment:
| Q |
1 |
gtttagaggtaacatattatgttttaacttattgatacccatacaaatagtagtgacaatagttattaatacaccacataactacaggttttattgccct |
100 |
Q |
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| T |
20729808 |
gtttagaggtaacatattatgttttaacttattgatacccatacaaatagtagtgacaatagttattaatacaccacataactacaggttttattgccct |
20729709 |
T |
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| Q |
101 |
tggacaatcattgtcagtaacacatgcaattttagctgcatcatc |
145 |
Q |
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| T |
20729708 |
tggacaatcattgtcagtaacacatgcaattttagctgcatcatc |
20729664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 20729584 - 20729518
Alignment:
| Q |
225 |
tgccatactttttatggacgcttcaataagaaacagagaaagaaatatgatcaaaacataaacaaac |
291 |
Q |
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| T |
20729584 |
tgccatactttttatggacgcttcaataagaaatagagaaagaaatatgatcaaaacataaacaaac |
20729518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 28912984 - 28912941
Alignment:
| Q |
248 |
caataagaaacagagaaagaaatatgatcaaaacataaacaaac |
291 |
Q |
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| T |
28912984 |
caataagaaattgagaaagaaagatgatcaaaacataaacaaac |
28912941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 31647 - 31615
Alignment:
| Q |
259 |
agagaaagaaatatgatcaaaacataaacaaac |
291 |
Q |
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| T |
31647 |
agagaaagaaagatgatcaaaacataaacaaac |
31615 |
T |
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