View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_high_9 (Length: 435)
Name: NF19406_high_9
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 153241 - 153659
Alignment:
| Q |
1 |
tgaaacaggactggaggtcaagaacaaaggttgagatataccaatatgttgttctgaagtggacccttgcacttcttattggtttaattacaggacttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153241 |
tgaaacaggactggaggtcaagaacaaaggttgagatataccaatatgttgttctgaagtggacccttgcacttcttattggtttaattacaggacttgt |
153340 |
T |
|
| Q |
101 |
tgggttctttaataaccttggagttgagaatattgctggtttcaaacttctactcaccaacaatctcatgctcaagcaaaagtaccatgaggcatttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153341 |
tgggttctttaataaccttggagttgagaatattgctggtttcaaacttctactcaccaacaatctcatgctcaagcaaaagtaccatgaggcatttgca |
153440 |
T |
|
| Q |
201 |
gtgtacgttggttgtaacatgattttaggggttggtgctgcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaagg |
300 |
Q |
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| T |
153441 |
gtgtacgttggttgtaacatgattttaggggttggtgcggcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaagg |
153540 |
T |
|
| Q |
301 |
catacctcaacggcattgatgcacattctatattggccccatctaccctctttgtcaaggtatgtaattactttacttttaagttcaaactggttttgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153541 |
catacctcaacggcattgatgcacattctatattggccccatctaccctctttgtcaaggtatgtaattactttacttttaagttcaaactggttttgat |
153640 |
T |
|
| Q |
401 |
ttgaatacatggatacaac |
419 |
Q |
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||| ||||||||||||||| |
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| T |
153641 |
ttgcatacatggatacaac |
153659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 56471667 - 56471562
Alignment:
| Q |
67 |
ttgcacttcttattggtttaattacaggacttgttgggttctttaataaccttggagttgagaatattgctggtttcaaacttctactcaccaacaatct |
166 |
Q |
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|||||||||||||||||||| ||||| ||||| | ||||| |||||| |||| ||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
56471667 |
ttgcacttcttattggtttaggcacaggtcttgtcgccttcttcaataacattggtgttgagaatattgctggtttcaagcttctcctcaccaaccatct |
56471568 |
T |
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| Q |
167 |
catgct |
172 |
Q |
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|||||| |
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| T |
56471567 |
catgct |
56471562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 56471403 - 56471251
Alignment:
| Q |
209 |
tggttgtaacatgattttaggggttggtgctgcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaaggcatacctc |
308 |
Q |
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||||||||||||| |||||| | | ||| ||||||||||| || || | || |||||||| || || ||||||||||| ||||| |||||||| || |
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| T |
56471403 |
tggttgtaacatggttttagccatcgctgcagcagccctgtgcgcctatgtcgcccctgcagcagccggatctggcatacctgaggtcaaggcatatctt |
56471304 |
T |
|
| Q |
309 |
aacggcattgatgcacattctatattggccccatctaccctctttgtcaaggt |
361 |
Q |
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|| ||| ||||||| | |||||||||||| ||| |||| |||||||| ||||| |
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| T |
56471303 |
aatggcgttgatgctccttctatattggctccacctactctctttgtaaaggt |
56471251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 361
Target Start/End: Complemental strand, 24332236 - 24332112
Alignment:
| Q |
237 |
gctgcagccctgtgtgcttacattgctcctgcagctgctggctctggcataccagaggtgaaggcatacctcaacggcattgatgcacattctatattgg |
336 |
Q |
| |
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|||||||| || ||||||| |||||||||| |||| || |||||||||||||| ||||| || ||||| ||||||||||| ||||| |||||||| ||| |
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| T |
24332236 |
gctgcagcactctgtgctttcattgctccttcagcagcaggctctggcataccggaggttaaagcatatctcaacggcatcgatgctcattctattctgg |
24332137 |
T |
|
| Q |
337 |
ccccatctaccctctttgtcaaggt |
361 |
Q |
| |
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||||| | ||||| ||||| ||||| |
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| T |
24332136 |
ccccaaccaccctttttgtaaaggt |
24332112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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