View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19406_low_1 (Length: 794)

Name: NF19406_low_1
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19406_low_1
NF19406_low_1
[»] chr4 (6 HSPs)
chr4 (15-579)||(7095266-7095838)
chr4 (648-777)||(7095061-7095190)
chr4 (205-262)||(50136542-50136599)
chr4 (206-263)||(42096770-42096827)
chr4 (193-243)||(55301399-55301449)
chr4 (206-263)||(30211978-30212035)
[»] chr6 (2 HSPs)
chr6 (205-263)||(2904753-2904811)
chr6 (205-262)||(28992403-28992460)
[»] chr8 (2 HSPs)
chr8 (193-263)||(5995158-5995228)
chr8 (193-263)||(157515-157585)
[»] chr1 (2 HSPs)
chr1 (206-262)||(14210677-14210733)
chr1 (206-263)||(6960013-6960070)
[»] chr7 (1 HSPs)
chr7 (193-243)||(41909316-41909366)
[»] chr5 (1 HSPs)
chr5 (193-263)||(8254759-8254829)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 579
Target Start/End: Complemental strand, 7095838 - 7095266
Alignment:
Q  15 aatatacctcggtgtggtttttaaaaaataatggggtgtcaaaatgatagtttccactgtattgttatatcttgatgtctaatgatggcccaagaggatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7095838 aatatacctcggtgtggtttttaaaaaataatggggtgtcaaaatgatagtttccactgtattgttatatcttgatgtctaatgatggcccaagaggatc 7095739  T
Q  115 tgattcaaactgttggattgggctgtctcagaaaaaagagagttgctcgtctcccatcgatttttgttcattcccatcct-------------cacgcaa 201  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||| ||||||             |||||||    
T  7095738 tgattcaaactgctggattgggctgtctcaaaaaaaaaagagttgctcgtctcccattgatttttgctcattctcatcctacgtgagttaactcacgcaa 7095639  T
Q  202 gtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgttcgactatcttacagcaataagcaaaatgagatgggaaa 301  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7095638 gtgtattttcaatgtaagttaactcacataagtgtatttttcagtgtgagttaactcacgttcgactatcttacggcaataagcaaaatgagataggaaa 7095539  T
Q  302 agagcaattatgctnnnnnnnntatcttagtccaatctcaataatattatcttgatggtagtgacagaatatataaaaagagatttaccacttcaatgcc 401  Q
    |||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7095538 agagcaatgatgctaaaaaa--tatcttagtccaatctcaataatattatcttgatggtagtgacagaatatataaaaagagatttaccacttcaatgcc 7095441  T
Q  402 ttttctaacacaattgaagaagtaaattgaaagaggagaataatgaagatnnnnnnntccaattattcttggttgcacaaggatcttatgactcattgac 501  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||       |||||||||  ||||||||||||||||| ||||||||||||||    
T  7095440 ttttctaacacaattgaag---taaattgaaagaggagaataatgaagataaaaaaatccaattatctttggttgcacaaggatcgtatgactcattgac 7095344  T
Q  502 taggattataatccaacctacatagtatagaatgtcaaattgttcttcaatgccactcaataaaatatctgtcacttg 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7095343 taggattataatccaacctacatagtatagaatgtcaaattgttcttcaatgccactcaaaaaaatatctgtcacttg 7095266  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 648 - 777
Target Start/End: Complemental strand, 7095190 - 7095061
Alignment:
Q  648 catataaacaagaatcataccatttcaaatggatgcttttttcttcctcgtaggattaatgtcttttgtctcttatttacatggaataatgttgaattga 747  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7095190 catataaacaagaatcataccatttcacatggatacttttttcttcctcgtaggattaatgtcttttgtctcttatttacatggaataatgttgaattga 7095091  T
Q  748 tccaaattctaacattataaatattctgtt 777  Q
    ||||||||||||||||||||||||||||||    
T  7095090 tccaaattctaacattataaatattctgtt 7095061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 50136542 - 50136599
Alignment:
Q  205 tattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgt 262  Q
    |||||||| | | |||||||||||||| ||||||||||| ||||||||||||||||||    
T  50136542 tattttcagtttgagttaactcacataggtgtatttttcagtgtgagttaactcacgt 50136599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 42096770 - 42096827
Alignment:
Q  206 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 263  Q
    |||||||| || |||||||||||||| ||| ||||||| | |||||||||||||||||    
T  42096770 attttcaacgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgtt 42096827  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 55301399 - 55301449
Alignment:
Q  193 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttc 243  Q
    |||||||| ||| |||||||| || |||| |||||||||||||||||||||    
T  55301399 ctcacgcatgtacattttcaacgtgagttgactcacataagtgtatttttc 55301449  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 30211978 - 30212035
Alignment:
Q  206 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 263  Q
    |||||||| || ||||||||||| || ||| ||||| | |||||||||||||||||||    
T  30211978 attttcaacgtgagttaactcacgtaggtgcattttccagtgtgagttaactcacgtt 30212035  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 2904753 - 2904811
Alignment:
Q  205 tattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 263  Q
    ||||||||| || ||||||||||| || ||||||||||||| |||||||||||||||||    
T  2904753 tattttcaacgtgagttaactcacgtaggtgtatttttctgcgtgagttaactcacgtt 2904811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 28992460 - 28992403
Alignment:
Q  205 tattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgt 262  Q
    ||||||||  || ||||||||||| || ||||||||||| | ||||||||||||||||    
T  28992460 tattttcagcgtgagttaactcacgtatgtgtatttttcagcgtgagttaactcacgt 28992403  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 5995158 - 5995228
Alignment:
Q  193 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 263  Q
    |||||||| || ||||||| | || ||||||||| |||| ||||||||||| | |||||||||||||||||    
T  5995158 ctcacgcatgtgtattttcgacgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgtt 5995228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 157585 - 157515
Alignment:
Q  193 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 263  Q
    |||||||| ||  ||||||||| | |||||| |||| || ||||||||||| | |||||||||||||||||    
T  157585 ctcacgcatgtgcattttcaatatgagttaattcacgtaggtgtatttttcagcgtgagttaactcacgtt 157515  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 14210677 - 14210733
Alignment:
Q  206 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgt 262  Q
    |||||||| || |||||||||||||| ||||||||||| | |||||||| |||||||    
T  14210677 attttcaacgtgagttaactcacataggtgtatttttcagcgtgagttatctcacgt 14210733  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 6960070 - 6960013
Alignment:
Q  206 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 263  Q
    |||||||| || |||||||| || || ||||||||||| ||||||||||||| |||||    
T  6960070 attttcaacgtgagttaacttacgtaggtgtatttttcagtgtgagttaacttacgtt 6960013  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 41909366 - 41909316
Alignment:
Q  193 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttc 243  Q
    |||||||| |||||||||||| ||||||||||||||  |||| ||||||||    
T  41909366 ctcacgcatgtatattttcaacgtaagttaactcacgcaagtatatttttc 41909316  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 8254759 - 8254829
Alignment:
Q  193 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 263  Q
    |||||||| ||  ||||||| ||| ||||||||||||||  || ||||||| | |||||||||||||||||    
T  8254759 ctcacgcatgtgcattttcagtgtgagttaactcacatatatgcatttttcagcgtgagttaactcacgtt 8254829  T

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