View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_13 (Length: 390)
Name: NF19406_low_13
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 7175989 - 7175629
Alignment:
| Q |
18 |
aagttaaccattccaatgttattcgtctttccggtgttagcttcaatcaaggacattggtaccttgtttatgagtatgctgctaatggagcattaagtga |
117 |
Q |
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| T |
7175989 |
aagttaaccattccaatgttattcgtctttccggtgttagcttcaatcaaggacattggtaccttgtttatgagtatgctgctaatggagcattaagtga |
7175890 |
T |
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| Q |
118 |
ttggttattttctaacnnnnnnntggatgatggaaatattctgagttggattcggagaataaagattgcattagatgtggcaataggagttgaatatctt |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175889 |
ttggttattttctaacaaaaaaatggatgatggaaatattctgagttggattcggagaataaagattgcattagatgtggcaataggagttgaatatctt |
7175790 |
T |
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| Q |
218 |
catagtttcacttctccttcacatattcataaggatctaaagtgtagtaacatacttcttgatagtgattttaaagcaaaggttgcaaatttaaggcatt |
317 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175789 |
catagtttcacttctcctccacatattcataaggatctaaagtgtagtaacatacttcttgatagtgattttaaagcaaaggttgcaaatttaaggcatg |
7175690 |
T |
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| Q |
318 |
taaggtgtgtggaaggagttgaaaatgatgaagaatttgttgctacaagacatattcttgg |
378 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7175689 |
taaggtgtgtggaagaagttgaaaatgatgaagaatttgttgctacaagacatattgttgg |
7175629 |
T |
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