View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_17 (Length: 364)
Name: NF19406_low_17
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 49 - 348
Target Start/End: Original strand, 50239907 - 50240203
Alignment:
| Q |
49 |
ctacctcgtcactcccaacatatataaacaatctcattccttaatccaacccatcacaattctctaattcatccattcaaattatcttttactacctcac |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
50239907 |
ctacctcgtcactcccaacatatataaacaatctcattccttaatccaacccatcacaattct--aattcatccattcaaat-atcttttactacctcac |
50240003 |
T |
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| Q |
149 |
aaatcaaaacatgactctccttcaactcacnnnnnnnccaatatttttcactctttttgctatactcattccaataattactacaaaactcttttttaca |
248 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240004 |
aaatcaaaacatgactctccttcaactcacaaaaaaaccaatatttttcactctttttgctatactcattccaataattactacaaaactcttttttaca |
50240103 |
T |
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| Q |
249 |
ccctctctctcaacctcaattgcttgtgccactttcatcacattattattatggtttatatacctaactaattccaattcaaacagccataagaaaaatt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240104 |
ccctctctctcaacctcaattgcttgtgccactttcatcacattattattatggtttatatacctaactaattccaattcaaacagccataagaaaaatt |
50240203 |
T |
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