View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_18 (Length: 351)
Name: NF19406_low_18
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 12143923 - 12144250
Alignment:
| Q |
7 |
tccaagaatatcatcagcactatagttgtccttttccattatctttagattgagctcataagcattgtcagaaacagtgaaaagaaatgtctcattccat |
106 |
Q |
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| T |
12143923 |
tccaagattatcatcagcactatagttgtccttttccattatctttagattgagctcataagcagtgtcagaaacagtgaaaagaaatgtctcattccat |
12144022 |
T |
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| Q |
107 |
tgagggttggatccagcacctgatattattcataatatgataatcaagcaactagagagnnnnnnnnnttaacaaataagcagattaatactatgtttgt |
206 |
Q |
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| T |
12144023 |
tgagggttggatccagcacctgatattattcataatacaataatcaagcaactagagagaaataaaaattaacaaataagcagattaatactatgtttat |
12144122 |
T |
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| Q |
207 |
catcagattcagaaatgtaccttcttgcacagtactcttgtgctcctgtgccctgtaagtgaggatcacataaggatctatgctagctgctcattcagaa |
306 |
Q |
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| T |
12144123 |
catcagattcagaaatgtaccttcttgcacagtactcttgtgctcctgtgccctgtaagtgaggatcacataaggatctatgctagctgctcattcagaa |
12144222 |
T |
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| Q |
307 |
caaagatcaagactttagaggatcatat |
334 |
Q |
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| T |
12144223 |
caaagatcaagactttagaggatcatat |
12144250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 12151149 - 12151263
Alignment:
| Q |
27 |
tatagttgtccttttccattatctttagattgagctcataagcattgtcagaaacagtgaaaagaaatgtctcattccattgagggttggatccagcacc |
126 |
Q |
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| T |
12151149 |
tatagttgtccttttccattatctttagattgagctcagaagcattgtcagaaacagtgaaaagaaatgtctcattccattgtgggttagatccagcacc |
12151248 |
T |
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| Q |
127 |
tgatattattcataa |
141 |
Q |
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| T |
12151249 |
tgatattattcataa |
12151263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 12151331 - 12151416
Alignment:
| Q |
215 |
tcagaaatgtaccttcttgcacagtactcttgtgctcctgtgccctgtaagtgaggatcacataaggatctatgctagctgctcat |
300 |
Q |
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| T |
12151331 |
tcagaattttaccttcttgaacagtactcttgtgctcctgtccactgtaactaaggatcacataaggatctatgctagctgctcat |
12151416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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