View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_21 (Length: 322)
Name: NF19406_low_21
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 280430 - 280140
Alignment:
| Q |
19 |
agtcttccatagtgg----aattaaggatgtggtttggtttgggaggatcaaatatgctctctcttaactacattgtcatataggttccaaacttgtaaa |
114 |
Q |
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| T |
280430 |
agtcttccatagtgggattaattaaggatgtggtttggtttgggaggatcaaatatgctctctcttaactacattgtcatataggttccaaacttgtaaa |
280331 |
T |
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| Q |
115 |
ttataccaccgattaatcaagaacaacaatcatatctaagaaatca-taaacatgacataaatgaatgtccacttcattaactgaaattacaatctctat |
213 |
Q |
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| T |
280330 |
ttataccaccgattaatcaagaacaacaatcatatctaagaaatcactaaacatgacataaatggatgtccacttcattaactgaaattacaatctctat |
280231 |
T |
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| Q |
214 |
gtatcccctaaatcatacctaagtttgatttttctgactaactttccaattaacatttgtccattggaagttcatgaagccaccatctctg |
304 |
Q |
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| T |
280230 |
gtatcccttaaatcatacctaagtttgatttttctgactaactttccaattaacatttgtccattggaagttcatgaagccaccatctctg |
280140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 265924 - 265796
Alignment:
| Q |
104 |
aaacttgtaaattataccaccgattaatcaagaacaacaatcatatctaagaaatca-taaacatgacataaatgaatgtccacttcattaactgaaatt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
265924 |
aaacttgtaaattataccaccgattaatcaagaacaacaatcatgtctaagaaaacactaaacatgacataaatgaatgttcacttcattaactgaaatt |
265825 |
T |
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| Q |
203 |
acaatctctatgtatcccctaaatcatac |
231 |
Q |
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| T |
265824 |
acaatctctctgtaccccccaaattatac |
265796 |
T |
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