View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_24 (Length: 284)
Name: NF19406_low_24
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 46747392 - 46747658
Alignment:
| Q |
15 |
agcttattcacgttcagggaatttaataaggaaaaataagccagaagtgagaggtagtagaggagaatattcagcaccagcttcaatgagagcttctcca |
114 |
Q |
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| T |
46747392 |
agcttattcacgttcagggaatttaataaggaaaaataagccagaagtgagaggtagtagaggagaatattcagcaccagcttcaatgagagcttctcca |
46747491 |
T |
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| Q |
115 |
acaaatagtggcttattgcttgcaacaggtggttctctttcttcatcttcttctaataatagttccatggaagagttacaagcagctattcaagctgcaa |
214 |
Q |
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| T |
46747492 |
acaaatagtggcttattgcttgcaacaggtggttctctttcttcatcttcttctaataatagttccatggaagagttacaagcagctattcaagctgcaa |
46747591 |
T |
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| Q |
215 |
ttgctcactgcaaaaattctattgcaaaagaagataagctcagttaaatttctcatattcttcgaca |
281 |
Q |
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| T |
46747592 |
ttgctcactgcaaaaattctattgcaaaagaagataagctcagttaaatttctcatactcttagaca |
46747658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 5998763 - 5998711
Alignment:
| Q |
181 |
atggaagagttacaagcagctattcaagctgcaattgctcactgcaaaaattc |
233 |
Q |
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| T |
5998763 |
atggaagagttacaagctgctattcaatctgcaattgctcattgcaaaaattc |
5998711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 5998853 - 5998810
Alignment:
| Q |
82 |
tattcagcaccagcttcaatgagagcttctccaacaaatagtgg |
125 |
Q |
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| T |
5998853 |
tattcagcaccagcatcaatgagaacttctccaacaaatagtgg |
5998810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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