View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_31 (Length: 253)
Name: NF19406_low_31
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27476678 - 27476919
Alignment:
| Q |
1 |
gtttatcgtcttcaacttccaaaaccaatgaagaaaccaaaatcaccaatagcatcatcaacatctccatcaattttagtttcaactcgaaaaagaatca |
100 |
Q |
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| T |
27476678 |
gtttatcgtcttcaacttccaaaaccaatgaagaaaccaaaatcaccaatagcatcatcaacatctccatccattttagtttcaactcgaaaaagaatca |
27476777 |
T |
|
| Q |
101 |
tcacaaatggtgctttggaagagaagttgaggagaacaagatcggaaaatattataaaa---agtagtaataataatattggtgcgaccaaacaagtttt |
197 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27476778 |
tcacaaatggtgctttagaagagaagttgaggagaacaagatcggaaaatattataaaaagtagtagtaataataatattggtgcgaccaaacaagtttt |
27476877 |
T |
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| Q |
198 |
caggaataaggtgagaaggtataagcttttagatgaagtttc |
239 |
Q |
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| T |
27476878 |
caggaataaggtgagaaggtataagcttttagatgaagtttc |
27476919 |
T |
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