View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19406_low_33 (Length: 235)

Name: NF19406_low_33
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19406_low_33
NF19406_low_33
[»] scaffold0060 (1 HSPs)
scaffold0060 (93-220)||(49879-50002)
[»] scaffold0070 (2 HSPs)
scaffold0070 (93-220)||(61406-61529)
scaffold0070 (93-220)||(65608-65731)
[»] chr2 (11 HSPs)
chr2 (93-220)||(9182575-9182698)
chr2 (93-180)||(24535126-24535213)
chr2 (93-220)||(30649008-30649131)
chr2 (101-180)||(24534864-24534943)
chr2 (101-180)||(24534995-24535074)
chr2 (93-220)||(17972530-17972653)
chr2 (93-220)||(30653707-30653830)
chr2 (93-220)||(25480694-25480818)
chr2 (93-220)||(25488300-25488424)
chr2 (93-175)||(28450068-28450150)
chr2 (103-171)||(30615774-30615842)
[»] chr8 (6 HSPs)
chr8 (93-220)||(17023050-17023173)
chr8 (93-220)||(4240185-4240308)
chr8 (93-220)||(17553543-17553666)
chr8 (93-219)||(8320490-8320612)
chr8 (93-170)||(23083777-23083854)
chr8 (101-141)||(27919373-27919413)
[»] chr5 (7 HSPs)
chr5 (93-220)||(26670094-26670217)
chr5 (93-220)||(26941691-26941814)
chr5 (93-219)||(41999523-41999645)
chr5 (93-220)||(559585-559708)
chr5 (93-220)||(39521244-39521369)
chr5 (93-220)||(36939369-36939492)
chr5 (103-171)||(36426471-36426539)
[»] chr4 (8 HSPs)
chr4 (93-220)||(31271589-31271712)
chr4 (18-100)||(39318468-39318550)
chr4 (93-220)||(37261719-37261842)
chr4 (93-171)||(33466260-33466338)
chr4 (100-180)||(19104851-19104931)
chr4 (93-147)||(12317508-12317562)
chr4 (93-153)||(41814843-41814903)
chr4 (188-220)||(39318567-39318599)
[»] chr3 (7 HSPs)
chr3 (93-220)||(23663273-23663396)
chr3 (93-220)||(18470032-18470155)
chr3 (93-219)||(8886039-8886161)
chr3 (95-220)||(24756312-24756433)
chr3 (95-220)||(24765309-24765430)
chr3 (93-171)||(12968992-12969070)
chr3 (137-220)||(3686248-3686327)
[»] chr1 (5 HSPs)
chr1 (93-171)||(47454088-47454166)
chr1 (93-220)||(10138118-10138241)
chr1 (93-171)||(16038447-16038525)
chr1 (93-167)||(25846617-25846691)
chr1 (93-171)||(11811747-11811825)
[»] scaffold0108 (1 HSPs)
scaffold0108 (93-151)||(22616-22674)
[»] chr7 (1 HSPs)
chr7 (93-171)||(10390273-10390351)


Alignment Details
Target: scaffold0060 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 50002 - 49879
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| |||||||||||| |||||||||||||||||||||| |||||||| ||     ||||    
T  50002 ccatttggagtactatcgagttatgaactgcggctaaagggactagtactcttatgaatatgattctagtgactggtgaatgaatgtcgaa----aaagt 49907  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  49906 ctatatttttctctgtctaaaacctttg 49879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 61406 - 61529
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||| ||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||     ||||    
T  61406 ccatttggagtactatcaagttatgaactgcgactaaagggactagtactcttatggatataattctagtgactgatgaatgaatgtcgaa----gaagt 61501  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  61502 ctatatttttctctgtctaaaacctttg 61529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 65608 - 65731
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||| ||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||     ||||    
T  65608 ccatttggagtactatcaagttatgaactgcgactaaagggactagtactcttatggatataattctagtgactgatgaatgaatgtcgaa----gaagt 65703  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  65704 ctatatttttctctgtctaaaacctttg 65731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 9182698 - 9182575
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||| | | |||||||     |||     
T  9182698 ccatttggagtactatcgagttatgaacgacggctaaagggactagtactcttatggatatgattctagagactggtgaataagtgtcaaa----gaaga 9182603  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  9182602 ctatatttttctctgtctaaaacctttg 9182575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 24535213 - 24535126
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtc 180  Q
    |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  24535213 ccatttggagtactatcgagttatgaacaacggctaaagggactagtactcttatggatatgattctagtgactggtgaatgagtgtc 24535126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 30649008 - 30649131
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  30649008 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 30649103  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  30649104 ctatatttttctctgtctaaaacctttg 30649131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 24534943 - 24534864
Alignment:
Q  101 agtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtc 180  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  24534943 agtactatcgagttatgaacaacggctaaagggactagtactcttatggatatgattctagtgactggtgaatgagtgtc 24534864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 24535074 - 24534995
Alignment:
Q  101 agtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtc 180  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  24535074 agtactatcgagttatgaacaacggctaaagggactagtactcttatggatatgattctagtgactggtgaatgagtgtc 24534995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 17972653 - 17972530
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||| |||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  17972653 ccatttggagtattatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 17972558  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  17972557 ctatatttttctctgtctaaaacctttg 17972530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 30653707 - 30653830
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || ||||||||||| ||||||||||| |||||||||||||||||||||| | | |||| ||     |||     
T  30653707 ccatttggagtactatcgagttatgaacggcggctaaagggacaggtactcttatgaatatgattctagtgactggtgaataagtgtcgaa----gaaga 30653802  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  30653803 ctatatttttctctgtctaaaacctttg 30653830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 25480818 - 25480694
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| | ||||||||||||||||||||||||||||||||| ||| |  | ||     ||||    
T  25480818 ccatttggagtactatcgagttatgaacggcggctaaagggactaatactcttatggatatgattctagtgactggtgaatgagtagcgaa----gaagt 25480723  T
Q  193 ctata-tttttctctgtctaaaacctttg 220  Q
    ||||| |||||||||||||||||||||||    
T  25480722 ctatattttttctctgtctaaaacctttg 25480694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 25488424 - 25488300
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| | ||||||||||||||||||||||||||||||||| ||| |  | ||     ||||    
T  25488424 ccatttggagtactatcgagttatgaacggcggctaaagggactaatactcttatggatatgattctagtgactggtgaatgagtagcgaa----gaagt 25488329  T
Q  193 ctata-tttttctctgtctaaaacctttg 220  Q
    ||||| |||||||||||||||||||||||    
T  25488328 ctatattttttctctgtctaaaacctttg 25488300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 28450068 - 28450150
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtga 175  Q
    |||||| ||||||  || ||||||||||||||||||||||||| ||||| ||||||||||||||| ||  |||||||||||||    
T  28450068 ccatttggagtaccgtcaagttatgaacaacgactaaagggactagtacccttatggatatgattataacgactggtgagtga 28450150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 30615774 - 30615842
Alignment:
Q  103 tactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    ||||||| | |||||||||| | |||||||||| ||||| |||||||| || ||||||||||| |||||    
T  30615774 tactatcaatttatgaacaatggctaaagggactagtacccttatggagattattctagtgacaggtga 30615842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 17023050 - 17023173
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  17023050 ccatttggagtactatcgagttatgaacagcggttaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 17023145  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  17023146 ctatatttttctctgtctaaaacctttg 17023173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 4240308 - 4240185
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||| |||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  4240308 ccatttggagtattatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 4240213  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  4240212 ctatatttttctctgtctaaaacctttg 4240185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 17553543 - 17553666
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||    | |  |||     
T  17553543 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgt----tgaagaaga 17553638  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  17553639 ctatatttttctctgtctaaaacctttg 17553666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 8320612 - 8320490
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||||||||||||||||||   || |||||||||| |||||||||||||||||| ||||||||||| |||| |||||||| ||     ||||    
T  8320612 ccatttggagtactatcgagttatgaattgcggctaaagggactagtactcttatggatatggttctagtgactcgtgaatgaatgtcgaa----gaagt 8320517  T
Q  193 ctatatttttctctgtctaaaaccttt 219  Q
    |||||||||||| ||||||||||||||    
T  8320516 ctatatttttctatgtctaaaaccttt 8320490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 23083854 - 23083777
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtg 170  Q
    |||||| |||||||||| ||||||||||  || |||||||||| || |||||||||||||||||||||||||||||||    
T  23083854 ccatttggagtactatcaagttatgaacggcggctaaagggactagcactcttatggatatgattctagtgactggtg 23083777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 27919373 - 27919413
Alignment:
Q  101 agtactatcgagttatgaacaacgactaaagggacaagtac 141  Q
    |||| ||||||||||||||||||| |||||||||| |||||    
T  27919373 agtattatcgagttatgaacaacggctaaagggactagtac 27919413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 26670094 - 26670217
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  26670094 ccatttggagtactatcgagttatgaacagcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 26670189  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    |||||||||||||||||||||| |||||    
T  26670190 ctatatttttctctgtctaaaatctttg 26670217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 26941691 - 26941814
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  26941691 ccatttggagtactatcgagttatgaacagcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 26941786  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    |||||||||||||||||||||| |||||    
T  26941787 ctatatttttctctgtctaaaatctttg 26941814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 41999523 - 41999645
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  41999523 ccatttggagtactatcgagttatgaacagcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 41999618  T
Q  193 ctatatttttctctgtctaaaaccttt 219  Q
    |||||||||||||| ||||||||||||    
T  41999619 ctatatttttctctttctaaaaccttt 41999645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 559585 - 559708
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||| |||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  559585 ccatttggagtattatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 559680  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  559681 ctatatttttctctgtctaaaacctttg 559708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 39521244 - 39521369
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | |||||| || ||   | |    
T  39521244 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataaatgtcgaagaa--gact 39521341  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
     ||| ||||||||| |||||||||||||    
T  39521342 atatttttttctctatctaaaacctttg 39521369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 36939492 - 36939369
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||| ||||||||||||||   || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  36939492 ccatttggagtattatcgagttatgaatggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 36939397  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  36939396 ctatatttttctctgtctaaaacctttg 36939369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 36426471 - 36426539
Alignment:
Q  103 tactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    ||||||||||||||||||  || | |||||||| |||||||||||||||||||| ||||||||||||||    
T  36426471 tactatcgagttatgaacggcggcaaaagggactagtactcttatggatatgatactagtgactggtga 36426539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 31271589 - 31271712
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  31271589 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 31271684  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  31271685 ctatatttttctctgtctaaaacctttg 31271712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 39318468 - 39318550
Alignment:
Q  18 tataactccgagctagtgtttcccttacagaggattcccaccataattgcccctctgagatacctaataattgccccatttag 100  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  39318468 tataactccgagctagtgtttctcttacataggattcccaccataaatgcccctttgagatacctaataattgccccatttag 39318550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 37261842 - 37261719
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| |||||||||||| |||||||||||||||||||||| | | |||| ||     |||     
T  37261842 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatgaatatgattctagtgactggtgaataagtgtcgaa----gaaga 37261747  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    |||||||||||||| |||||||||||||    
T  37261746 ctatatttttctctatctaaaacctttg 37261719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 33466338 - 33466260
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    |||||| |||||||||||||||||||||  || |||||||||| |||||||||||||||||||||||||||| ||||||    
T  33466338 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgattggtga 33466260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 19104851 - 19104931
Alignment:
Q  100 gagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtc 180  Q
    |||||||||||||||||||||  || |||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||    
T  19104851 gagtactatcgagttatgaacggcggctaaagggactagtactcttatggttatgattctagtgactggtgaatgagtgtc 19104931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 12317508 - 12317562
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttat 147  Q
    |||||| |||||||||||||||||||||| || |||||||||| |||||||||||    
T  12317508 ccatttggagtactatcgagttatgaacagcggctaaagggactagtactcttat 12317562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 41814843 - 41814903
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatat 153  Q
    |||||| |||||||||||||||||||||  || |||||||||| |||||||||||| ||||    
T  41814843 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatgaatat 41814903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 39318567 - 39318599
Alignment:
Q  188 taagtctatatttttctctgtctaaaacctttg 220  Q
    |||||||||||||||||||||||| ||||||||    
T  39318567 taagtctatatttttctctgtctataacctttg 39318599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 23663396 - 23663273
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  23663396 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 23663301  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  23663300 ctatatttttctctgtctaaaacctttg 23663273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 18470032 - 18470155
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||||||||||||||||||   || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  18470032 ccatttggagtactatcgagttatgaaaggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 18470127  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  18470128 ctatatttttctctgtctaaaacctttg 18470155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 8886039 - 8886161
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| |||||||||||||||||||||  || |||||||||| |||||||||||||||||||||| |||||||||||| | | |||| ||     |||     
T  8886039 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattcaagtgactggtgaataagtgtcgaa----gaaga 8886134  T
Q  193 ctatatttttctctgtctaaaaccttt 219  Q
    |||||||||||||||||||||||||||    
T  8886135 ctatatttttctctgtctaaaaccttt 8886161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 24756433 - 24756312
Alignment:
Q  95 atttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagtct 194  Q
    |||| ||||||||||||||||||||   || |||||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||     ||||||    
T  24756433 atttggagtactatcgagttatgaattgcggctaaagggactattactcttatggatatgattctagtgactggtgaatgaatgtcgaa----gaagtct 24756338  T
Q  195 atatttttctctgtctaaaacctttg 220  Q
    |||||||||||| |||| ||||||||    
T  24756337 atatttttctctatctacaacctttg 24756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 24765430 - 24765309
Alignment:
Q  95 atttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagtct 194  Q
    |||| ||||||||||||||||||||   || |||||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||     ||||||    
T  24765430 atttggagtactatcgagttatgaattgcggctaaagggactattactcttatggatatgattctagtgactggtgaatgaatgtcgaa----gaagtct 24765335  T
Q  195 atatttttctctgtctaaaacctttg 220  Q
    |||||||||||| |||| ||||||||    
T  24765334 atatttttctctatctacaacctttg 24765309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 12969070 - 12968992
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    |||||| ||||||||||||||||||||||  | |||||||||| |||||||||||| ||||||||||| ||||||||||    
T  12969070 ccatttggagtactatcgagttatgaacattggctaaagggactagtactcttatgaatatgattctattgactggtga 12968992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 3686248 - 3686327
Alignment:
Q  137 agtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagtctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||||||||| | | |||| ||     ||| ||||||||||||||||||||||||||||    
T  3686248 agtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaagactatatttttctctgtctaaaacctttg 3686327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 47454166 - 47454088
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  47454166 ccatttggagtactatcgagttatgaacaacgactaaagggactagtactcttatggatatgattctagtgactagtga 47454088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 10138118 - 10138241
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtgagtgaatgtcaaataattaagt 192  Q
    |||||| ||||| |||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| | | |||| ||     |||     
T  10138118 ccatttggagtattatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactggtgaataagtgtcgaa----gaaga 10138213  T
Q  193 ctatatttttctctgtctaaaacctttg 220  Q
    ||||||||||||||||||||||||||||    
T  10138214 ctatatttttctctgtctaaaacctttg 10138241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 16038447 - 16038525
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    |||||| ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||    
T  16038447 ccatttggagtactatcgagttatgaacaacggctaaaggcactagtactcttatggatatgattctaatgactggtga 16038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 25846617 - 25846691
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactg 167  Q
    |||||| |||||||||||||||||||||  || |||||||||| |||||||||||||||||||||||||||||||    
T  25846617 ccatttggagtactatcgagttatgaacggcggctaaagggactagtactcttatggatatgattctagtgactg 25846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 11811747 - 11811825
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    |||||||||||| |||| |||||| |||||||||||||||||| ||||| || ||| |||||||| |||||||| ||||    
T  11811747 ccatttagagtattatcaagttataaacaacgactaaagggactagtaccctcatgaatatgattatagtgactagtga 11811825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 22616 - 22674
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggat 151  Q
    |||||| ||||||||||||||||||||||  | |||||||||| |||||||||||||||    
T  22616 ccatttggagtactatcgagttatgaacagtggctaaagggactagtactcttatggat 22674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 10390351 - 10390273
Alignment:
Q  93 ccatttagagtactatcgagttatgaacaacgactaaagggacaagtactcttatggatatgattctagtgactggtga 171  Q
    |||||| ||||||| ||||| ||||||||||| || ||||||| ||||| || |||  |||||||||||||||||||||    
T  10390351 ccatttggagtactgtcgagatatgaacaacggcttaagggactagtaccctcatgagtatgattctagtgactggtga 10390273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University