View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19406_low_35 (Length: 226)
Name: NF19406_low_35
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19406_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 42463905 - 42463713
Alignment:
| Q |
21 |
cacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaat |
120 |
Q |
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| T |
42463905 |
cacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttagatatgttgctgtttaagcagttgctaacaggtatatcaat |
42463806 |
T |
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| Q |
121 |
gagtctatagttagctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataat |
213 |
Q |
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| T |
42463805 |
gagtctatagttagctccaagaggaacagctggttttgctctcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataat |
42463713 |
T |
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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 37077941 - 37077778
Alignment:
| Q |
50 |
gaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagtctatagttagctccaagaggaacag |
149 |
Q |
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| T |
37077941 |
gaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggcagttgctgacagggatatcaatcagcctatagtttgctccaagaggaacag |
37077842 |
T |
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| Q |
150 |
ctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataat |
213 |
Q |
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| T |
37077841 |
ctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccccctccaagtataat |
37077778 |
T |
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