View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19406_low_4 (Length: 590)

Name: NF19406_low_4
Description: NF19406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19406_low_4
NF19406_low_4
[»] chr5 (2 HSPs)
chr5 (1-236)||(15646041-15646274)
chr5 (1-236)||(15669861-15670094)
[»] chr3 (3 HSPs)
chr3 (1-237)||(5860487-5860722)
chr3 (1-236)||(5877170-5877404)
chr3 (338-414)||(39970287-39970363)
[»] chr1 (8 HSPs)
chr1 (1-236)||(34167470-34167706)
chr1 (1-236)||(34172279-34172515)
chr1 (389-576)||(10342385-10342572)
chr1 (338-469)||(10361370-10361501)
chr1 (238-351)||(10342272-10342385)
chr1 (503-576)||(10361234-10361307)
chr1 (290-373)||(10180966-10181050)
chr1 (505-543)||(10340546-10340584)
[»] scaffold0050 (1 HSPs)
scaffold0050 (4-173)||(6015-6186)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15646274 - 15646041
Alignment:
Q  1 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15646274 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 15646175  T
Q  101 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgtnnnnnnnnnnnnntataaacaagaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||             ||||||||||||||    
T  15646174 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctcggctgt--acatacaaaaatataaacaagaaac 15646077  T
Q  201 atttttccccttcaatggtattgttctgagttaaca 236  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15646076 atttttccccttcaatgctattgttctgagttaaca 15646041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15670094 - 15669861
Alignment:
Q  1 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15670094 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 15669995  T
Q  101 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgtnnnnnnnnnnnnntataaacaagaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||             ||||||||||||||    
T  15669994 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctcggctgt--acatacaaaaatataaacaagaaac 15669897  T
Q  201 atttttccccttcaatggtattgttctgagttaaca 236  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15669896 atttttccccttcaatgctattgttctgagttaaca 15669861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5860722 - 5860487
Alignment:
Q  1 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5860722 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgttatatatagct 5860623  T
Q  101 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgtnnnnnnnnnnnnntataaacaagaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||     
T  5860622 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgt-atatacaaaaaatataaacaagaaat 5860524  T
Q  201 atttttccccttcaatggtattgttctgagttaacag 237  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5860523 atttttccccttcaatgctattgttctgagttaacag 5860487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 5877404 - 5877170
Alignment:
Q  1 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5877404 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgttatatatagct 5877305  T
Q  101 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgtnnnnnnnnnnnnntataaacaagaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||     
T  5877304 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgt-atatacaaaaaatataaacaagaaat 5877206  T
Q  201 atttttccccttcaatggtattgttctgagttaaca 236  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5877205 atttttccccttcaatgctattgttctgagttaaca 5877170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 414
Target Start/End: Complemental strand, 39970363 - 39970287
Alignment:
Q  338 tatttacaaacaacaacaagctcaaggagcagtttgttaagattgtttctgctggtggtttggtcaacaatgacact 414  Q
    ||||||||||  |||||||| |||||||||| ||||| |||| |||||||||||| |||||| | | ||||||||||    
T  39970363 tatttacaaatgacaacaagttcaaggagcaatttgtgaagaatgtttctgctgggggtttgcttatcaatgacact 39970287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34167706 - 34167470
Alignment:
Q  1 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34167706 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 34167607  T
Q  101 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgt-nnnnnnnnnnnnntataaacaagaaa 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||              || ||||||||||    
T  34167606 tttagtcaacatgtataggttaaatgctatttattacgttcatgtatatatacccaatagagggctctgctgtatatacaaaaaaaataaaaacaagaaa 34167507  T
Q  200 catttttccccttcaatggtattgttctgagttaaca 236  Q
     ||||||||||||||||| ||||||||||||||||||    
T  34167506 tatttttccccttcaatgctattgttctgagttaaca 34167470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34172515 - 34172279
Alignment:
Q  1 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34172515 gcatgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagct 34172416  T
Q  101 tttagtcaacatgtataggttaaatgctatttattacattcatgtatatatacccaatagagggctctgctgt-nnnnnnnnnnnnntataaacaagaaa 199  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||              || ||||||||||    
T  34172415 tttagtcaacatgtatagattaaatgctatttattacattcatgtatatatacccaatagagggctttgctgtatatacaaaaaaaataaaaacaagaaa 34172316  T
Q  200 catttttccccttcaatggtattgttctgagttaaca 236  Q
     ||||||||||||||||| ||||||||||||||||||    
T  34172315 tatttttccccttcaatgctattgttctgagttaaca 34172279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 389 - 576
Target Start/End: Original strand, 10342385 - 10342572
Alignment:
Q  389 ctggtggtttggtcaacaatgacacttctatacacgtaatttttatgtattttacggtcgatccttgaatctctttgtttaatatgtgtattcaaataaa 488  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10342385 ctggtggtttggtcaacaatcacacttctatacacgtaatttttatgtattttacggtcgatccttgaatctcttagtttaatatgtgtattcaaataaa 10342484  T
Q  489 acnnnnnnnctactatggatgctcttatttactattttgaagtatgtagcaccaatatttcatattgaaggcaccaatatgatagttg 576  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10342485 actttttttctactatggatgctcttatttactattttgaagtatgtagcaccaatatttcatattgaaggcaccaatatgatagttg 10342572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 338 - 469
Target Start/End: Complemental strand, 10361501 - 10361370
Alignment:
Q  338 tatttacaaacaacaacaagctcaaggagcagtttgttaagattgtttctgctggtggtttggtcaacaatgacacttctatacacgtaatttttatgta 437  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |     
T  10361501 tatttacaaacaacaacaagctcaaggagcagtttgttaagactgtttctgctggtggtttggtcatcaatgacactactatacacgtaatttttctttc 10361402  T
Q  438 ttttacggtcgatccttgaatctctttgttta 469  Q
    ||| || ||| ||||||||||||||| |||||    
T  10361401 tttcacagtctatccttgaatctcttagttta 10361370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 10342272 - 10342385
Alignment:
Q  238 tataaactttactgttttgggtttctactgctaggtatgaagnnnnnnnnnccagtttctatccatgctaaagtcttgttctgaaaattaaagggaggag 337  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10342272 tataaactttactgttttgggtttctactgctaggtatgaagaaaaaaaaaccagtttctatccatgctaaagtcttgttctgaaaattaaagggaggag 10342371  T
Q  338 tatttacaaacaac 351  Q
    ||||||||||||||    
T  10342372 tatttacaaacaac 10342385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 503 - 576
Target Start/End: Complemental strand, 10361307 - 10361234
Alignment:
Q  503 atggatgctcttatttactattttgaagtatgtagcaccaatatttcatattgaaggcaccaatatgatagttg 576  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||  ||||| | ||||||||    
T  10361307 atggatgctcttatttactattttgaagtatgtagcaccgatacttcagattgaagataccaacacgatagttg 10361234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 10180966 - 10181050
Alignment:
Q  290 cagtttctatccatgctaaagtcttgttctgaaaattaaagggaggag-tatttacaaacaacaacaagctcaaggagcagtttg 373  Q
    |||||||||||||||||||||||||| |  |||||||||  || |||  |||||| ||||||||| |||||||||||||||||||    
T  10180966 cagtttctatccatgctaaagtcttgctacgaaaattaagaggtggaactatttagaaacaacaagaagctcaaggagcagtttg 10181050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 543
Target Start/End: Complemental strand, 10340584 - 10340546
Alignment:
Q  505 ggatgctcttatttactattttgaagtatgtagcaccaa 543  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  10340584 ggatgctcttatttattattttgaagtatgtagcaccaa 10340546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 6015 - 6186
Alignment:
Q  4 tgagttgtctcttatgtaattagtcaatatttaggagatacacatcagtgttaatccctgattcataggctattttattttcttgtcatatatagctttt 103  Q
    |||||||| || ||||| |||||||||| || ||||||||| ||| ||||| ||||  ||||| |||||||||||||||||||||||| |||||||||||    
T  6015 tgagttgtttcctatgttattagtcaatgttgaggagatactcattagtgtaaatcggtgatttataggctattttattttcttgtcaaatatagctttt 6114  T
Q  104 agtcaacatgtataggt--taaatgctatttattacattcatgtatatatacccaatagagggctctgctgt 173  Q
    ||||||| |||||| ||  ||||| ||||||||||||||  ||||||||||||||||| |||||| ||||||    
T  6115 agtcaacttgtatatgttataaatcctatttattacattgttgtatatatacccaataaagggctatgctgt 6186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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